Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G65330.1 | Thale cress | nucleus | 61.73 | 35.48 |
| AT4G11250.1 | Thale cress | nucleus | 59.18 | 35.26 |
| AT5G27050.1 | Thale cress | nucleus | 19.39 | 31.67 |
| CDY37821 | Canola | nucleus | 43.37 | 30.8 |
| CDY33964 | Canola | nucleus | 45.41 | 30.8 |
| AT5G26865.1 | Thale cress | nucleus | 18.88 | 29.37 |
| Bra031864.1-P | Field mustard | nucleus | 45.41 | 26.89 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 44.39 | 26.36 |
| AT5G39810.1 | Thale cress | plastid | 43.37 | 25.84 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 24.49 | 25.67 |
| AT5G40220.1 | Thale cress | nucleus | 42.35 | 25.62 |
| AT5G39750.1 | Thale cress | nucleus | 43.88 | 24.23 |
| AT5G40120.1 | Thale cress | nucleus | 43.37 | 22.08 |
| AT5G27944.1 | Thale cress | nucleus | 25.0 | 21.88 |
| AT5G27580.1 | Thale cress | nucleus | 23.98 | 21.08 |
| AT5G37415.1 | Thale cress | nucleus | 33.16 | 20.57 |
| AT5G38740.1 | Thale cress | nucleus | 43.88 | 20.19 |
| AT5G27070.1 | Thale cress | nucleus | 27.55 | 18.82 |
| AT5G26950.1 | Thale cress | nucleus | 27.04 | 18.34 |
| AT3G18650.1 | Thale cress | plastid | 32.14 | 16.32 |
Protein Annotations
| MapMan:15.5.14 | EntrezGene:2745602 | Gene3D:3.40.1810.10 | UniProt:A0A178UXV6 | ProteinID:AAC28182.1 | ProteinID:AEE82144.1 |
| Symbol:AGL51 | ArrayExpress:AT4G02235 | EnsemblPlantsGene:AT4G02235 | RefSeq:AT4G02235 | TAIR:AT4G02235 | RefSeq:AT4G02235-TAIR-G |
| EnsemblPlants:AT4G02235.1 | TAIR:AT4G02235.1 | EMBL:AY141215 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_974500.1 | UniProt:O81421 |
| ProteinID:OAO98799.1 | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000A1E39 | SEG:seg | : |
Description
AGL51AGL51 [Source:UniProtKB/TrEMBL;Acc:A0A178UXV6]
Coordinates
chr4:+:980955..981711
Molecular Weight (calculated)
22479.6 Da
IEP (calculated)
10.186
GRAVY (calculated)
-0.673
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQSSFSSSS SSRNSTSLTN RLKTIFKKAE ELSILCAIDV CVIYYGPDGE LRTWPKERNT VKDMASRYKE ATKRKKKRTL STLQERLRIV ESQKQQNKNL
101: VHQSLTPSYL NQIQHLNPSN FSPYMYNHGD AATLSQLPLS ASLSNQLQLP ESLDAAWFWS EHVFGQHHQQ QQLSTSWRVK HTRILTVSFG TSICSE
101: VHQSLTPSYL NQIQHLNPSN FSPYMYNHGD AATLSQLPLS ASLSNQLQLP ESLDAAWFWS EHVFGQHHQQ QQLSTSWRVK HTRILTVSFG TSICSE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.