Factsheet for AT5G39810.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G39750.1	Thale cress	nucleus	90.88	84.23
AT5G40220.1	Thale cress	nucleus	57.14	58.02
AT5G41200.1	Thale cress	nucleus, plastid	58.05	57.88
AT5G40120.1	Thale cress	nucleus	54.41	46.49
AT5G38740.1	Thale cress	nucleus	58.05	44.84
AT4G02235.1	Thale cress	nucleus	25.84	43.37
AT5G37415.1	Thale cress	nucleus	41.34	43.04
AT5G26865.1	Thale cress	nucleus	15.5	40.48
AT5G65330.1	Thale cress	nucleus	41.34	39.88
AT4G11250.1	Thale cress	nucleus	38.6	38.6
AT5G27050.1	Thale cress	nucleus	13.37	36.67
CDY68883	Canola	nucleus	32.83	36.36
CDY65583	Canola	plastid	30.09	34.49
CDY44599	Canola	nucleus	34.04	33.33
Bra025609.1-P	Field mustard	nucleus	34.04	33.33
CDY36817	Canola	plastid	29.48	33.22
AT5G27090.1	Thale cress	nucleus, plastid	18.54	32.62
CDY36823	Canola	nucleus	30.09	32.46
CDY44595	Canola	nucleus	29.79	30.72
Bra025607.1-P	Field mustard	nucleus	32.52	30.66
CDY30838	Canola	nucleus	31.61	29.05
Bra025619.1-P	Field mustard	nucleus	31.91	28.61
AT5G27944.1	Thale cress	nucleus	18.54	27.23
AT5G27580.1	Thale cress	nucleus	18.24	26.91
AT5G27070.1	Thale cress	nucleus	20.97	24.04
AT5G26950.1	Thale cress	nucleus	20.06	22.84
AT3G18650.1	Thale cress	plastid	24.32	20.73
CDY44597	Canola	nucleus	10.64	14.77

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:833977	ProteinID:AED94478.1	Symbol:AGL98	ArrayExpress:AT5G39810
EnsemblPlantsGene:AT5G39810	RefSeq:AT5G39810	TAIR:AT5G39810	RefSeq:AT5G39810-TAIR-G	EnsemblPlants:AT5G39810.1	TAIR:AT5G39810.1
ProteinID:BAB11385.1	ncoils:Coil	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	InterPro:MADS_SRF-like	RefSeq:NP_198797.1	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF350	UniProt:Q9FIW6	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI00000AB369	SEG:seg	:	:	:	:

Description

AGL98Protein agamous-like 98 [Source:UniProtKB/TrEMBL;Acc:Q9FIW6]

Coordinates

chr5:-:15937278..15938458

Molecular Weight (calculated)

37290.6 Da

IEP (calculated)

5.918

GRAVY (calculated)

-0.643

Length

329 amino acids

Sequence
(BLAST)

001: MAIRSLPSSS GCSNSSSSSS YSLASTSLSN RLETIFRKAS ELCTLCDIEA CVIYYGPDGE LKTWPPEREK VEDIALRYSQ LNEALRRKKS VTLYDFLNKK
101: KNKTNLEKKA KIKDNDLKRL SLEPHVSKVR ERIRFVESQK HKETKPDHQS LASSSLNNQT QSLNPSQFSL FMYNHGDNIL SQIPVSASNF NQDYFSALLE
201: QSELKSQIMK QEVCGYEQNM CMSNNGDATL SQIPLSASNF NQEFSALLQE ESGLMQQELC NYDQNMFMNN NNFQHSFVSN TQDHSAPAVQ ESVNNNYGLM
301: PHVPCGYDQN LFTSDITNNN LLIDNSMFL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.