Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G26950.1 | Thale cress | nucleus | 82.93 | 82.35 |
| AT5G27944.1 | Thale cress | nucleus | 64.11 | 82.14 |
| AT5G26865.1 | Thale cress | nucleus | 34.84 | 79.37 |
| AT5G27050.1 | Thale cress | nucleus | 31.71 | 75.83 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 49.13 | 75.4 |
| AT5G27580.1 | Thale cress | nucleus | 54.36 | 69.96 |
| CDY63010 | Canola | plastid | 7.67 | 35.48 |
| CDX73406 | Canola | plastid | 29.97 | 30.5 |
| CDX93744 | Canola | nucleus | 29.62 | 29.82 |
| Bra020923.1-P | Field mustard | nucleus | 21.6 | 29.67 |
| Bra028019.1-P | Field mustard | nucleus | 29.27 | 29.47 |
| Bra007138.1-P | Field mustard | nucleus | 28.22 | 28.83 |
| Bra018741.1-P | Field mustard | nucleus | 26.48 | 28.79 |
| Bra004071.1-P | Field mustard | nucleus | 28.22 | 28.52 |
| CDX93682 | Canola | nucleus | 23.69 | 28.1 |
| AT4G02235.1 | Thale cress | nucleus | 18.82 | 27.55 |
| CDX73409 | Canola | nucleus | 21.95 | 27.39 |
| CDX93708 | Canola | nucleus | 26.13 | 27.17 |
| CDY63012 | Canola | cytosol | 18.82 | 27.0 |
| CDY40199 | Canola | nucleus | 24.39 | 26.82 |
| CDY27890 | Canola | nucleus | 28.22 | 25.39 |
| Bra018767.1-P | Field mustard | nucleus | 26.83 | 25.16 |
| Bra015129.1-P | Field mustard | nucleus | 27.53 | 24.76 |
| Bra028020.1-P | Field mustard | nucleus | 22.65 | 24.71 |
| CDX93743 | Canola | nucleus | 22.65 | 24.71 |
| CDY56522 | Canola | nucleus | 19.51 | 24.03 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 26.13 | 22.06 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 24.74 | 21.52 |
| Bra007139.1-P | Field mustard | nucleus | 12.54 | 21.18 |
| AT5G40220.1 | Thale cress | nucleus | 23.69 | 20.99 |
| AT5G39810.1 | Thale cress | plastid | 24.04 | 20.97 |
| AT5G39750.1 | Thale cress | nucleus | 25.09 | 20.28 |
| CDY28851 | Canola | nucleus | 19.86 | 20.07 |
| AT3G18650.1 | Thale cress | plastid | 26.13 | 19.43 |
| AT5G65330.1 | Thale cress | nucleus | 23.0 | 19.35 |
| CDY18533 | Canola | nucleus | 4.88 | 19.18 |
| AT4G11250.1 | Thale cress | nucleus | 21.95 | 19.15 |
| AT5G38740.1 | Thale cress | nucleus | 26.83 | 18.08 |
| AT5G40120.1 | Thale cress | nucleus | 24.04 | 17.92 |
| CDY67867 | Canola | mitochondrion | 24.74 | 16.82 |
| AT5G37415.1 | Thale cress | nucleus | 17.77 | 16.14 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:832753 | EntrezGene:832765 | ProteinID:AAB61064.1 | ProteinID:AAD48935.1 |
| ProteinID:AED93633.1 | ProteinID:AED93646.1 | Symbol:AGL53 | ArrayExpress:AT5G27070 | EnsemblPlantsGene:AT5G27070 | RefSeq:AT5G27070 |
| TAIR:AT5G27070 | RefSeq:AT5G27070-TAIR-G | EnsemblPlants:AT5G27070.1 | TAIR:AT5G27070.1 | EMBL:AY141217 | EMBL:AY141228 |
| EMBL:BT028900 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_198047.1 | RefSeq:NP_198059.1 | PFAM:PF00319 |
| PO:PO:0009089 | PO:PO:0020090 | PO:PO:0020093 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 |
| UniProt:Q7X9N2 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00001625E4 |
| SEG:seg | : | : | : | : | : |
Description
AGL53Agamous-like MADS-box protein AGL53 [Source:UniProtKB/Swiss-Prot;Acc:Q7X9N2]
Coordinates
chr5:+:9527741..9528604
Molecular Weight (calculated)
32685.8 Da
IEP (calculated)
8.605
GRAVY (calculated)
-0.655
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV CVIYYGRDGK LIKTWPEDQS KVRDMAERFS RLHERERCKK
101: RTNLSLFLRK KILDDTKLSE KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQW TEPLMSGVSN TEQDLSTSSL
201: SQNQSRISVF LYNHDNRSFY QVPDSVSSFD QSALLGEQGS GLGSNFDLPP MVFPPQMQTQ TPLVPFDQFA AWNQAPSFAD PMMFPYN
101: RTNLSLFLRK KILDDTKLSE KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQW TEPLMSGVSN TEQDLSTSSL
201: SQNQSRISVF LYNHDNRSFY QVPDSVSSFD QSALLGEQGS GLGSNFDLPP MVFPPQMQTQ TPLVPFDQFA AWNQAPSFAD PMMFPYN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.