Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36817 | Canola | plastid | 21.92 | 5.48 |
| AT5G26950.1 | Thale cress | nucleus | 20.55 | 5.19 |
| CDY56522 | Canola | nucleus | 16.44 | 5.15 |
| CDY37821 | Canola | nucleus | 19.18 | 5.07 |
| CDX93682 | Canola | nucleus | 16.44 | 4.96 |
| CDY36823 | Canola | nucleus | 20.55 | 4.92 |
| AT5G27944.1 | Thale cress | nucleus | 15.07 | 4.91 |
| CDY65583 | Canola | plastid | 19.18 | 4.88 |
| AT5G27070.1 | Thale cress | nucleus | 19.18 | 4.88 |
| CDY68883 | Canola | nucleus | 19.18 | 4.71 |
| CDX93708 | Canola | nucleus | 17.81 | 4.71 |
| CDY33964 | Canola | nucleus | 17.81 | 4.5 |
| CDY44599 | Canola | nucleus | 20.55 | 4.46 |
| CDY27890 | Canola | nucleus | 19.18 | 4.39 |
| CDX73406 | Canola | plastid | 16.44 | 4.26 |
| CDY40199 | Canola | nucleus | 15.07 | 4.21 |
| CDX93744 | Canola | nucleus | 16.44 | 4.21 |
| AT5G27050.1 | Thale cress | nucleus | 6.85 | 4.17 |
| CDY44595 | Canola | nucleus | 17.81 | 4.08 |
| AT5G27580.1 | Thale cress | nucleus | 12.33 | 4.04 |
| AT5G26865.1 | Thale cress | nucleus | 6.85 | 3.97 |
| CDX73409 | Canola | nucleus | 12.33 | 3.91 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 17.81 | 3.82 |
| CDX93743 | Canola | nucleus | 13.7 | 3.8 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 9.59 | 3.74 |
| CDY30838 | Canola | nucleus | 17.81 | 3.63 |
| CDY28851 | Canola | nucleus | 13.7 | 3.52 |
| CDY63012 | Canola | cytosol | 9.59 | 3.5 |
| CDY67867 | Canola | mitochondrion | 19.18 | 3.32 |
| CDY63010 | Canola | plastid | 2.74 | 3.23 |
| CDY44597 | Canola | nucleus | 9.59 | 2.95 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 9.59 | 2.85 |
| CDX99332 | Canola | plastid | 13.7 | 2.81 |
| CDX92256 | Canola | plastid | 12.33 | 2.43 |
| CDX95509 | Canola | plastid | 9.59 | 2.42 |
| CDX75976 | Canola | mitochondrion, nucleus | 5.48 | 1.97 |
Protein Annotations
| EnsemblPlants:CDY18533 | EnsemblPlantsGene:GSBRNA2T00005559001 | ProteinID:CDY18533 | ProteinID:CDY18533.1 | UniParc:UPI0004EEBFD1 | UniProt:A0A078G1R9 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA01g26620DBnaA01g26620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1R9]
Coordinates
chrLK032086:-:339433..339654
Molecular Weight (calculated)
8044.2 Da
IEP (calculated)
5.567
GRAVY (calculated)
-0.700
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: MNVEDYSGSL RAQGPNGLQN MDLQGYNNNS INTNGFSHQL VQFPAQRAAP ACQYVDGSTQ NIRPQFQYSS FVG
001: MASSSSSSLS FSTSKKNKTF FKKPNSAFSS SRATSLIKRQ QTVFKKAKEL SILCDIDVCV ICYGSNGELK TWPEEREKVK AIARRYGELS ETKRRKGSVD
101: LHEFLEKMNK DDPEKEEKKK IKVRRVPKVK YPVWDPRFDN YSVEQLMGLV QSLERNLTRI QHRTCAVVEA QGQRRVQYTN MANQELMMAN TMNQLQQHSN
201: QVSMYLWNHG NGAFSQIPVS ALASNQTQSL APIPPELMIY PNSDAGNYSG SLGVQGTGIN GLQNMNMLTY NNINSVNDFS KQFDQNSRAE SYSSLLGVHE
301: DGNNEFENPN MSSRNNFNVQ DCAGLLGMQG AGTNGLQSMN MHDYSNNNSI NSNGLSHQYV QFPTYNSQHQ DRVFNLDQNG NNTRSL
101: LHEFLEKMNK DDPEKEEKKK IKVRRVPKVK YPVWDPRFDN YSVEQLMGLV QSLERNLTRI QHRTCAVVEA QGQRRVQYTN MANQELMMAN TMNQLQQHSN
201: QVSMYLWNHG NGAFSQIPVS ALASNQTQSL APIPPELMIY PNSDAGNYSG SLGVQGTGIN GLQNMNMLTY NNINSVNDFS KQFDQNSRAE SYSSLLGVHE
301: DGNNEFENPN MSSRNNFNVQ DCAGLLGMQG AGTNGLQSMN MHDYSNNNSI NSNGLSHQYV QFPTYNSQHQ DRVFNLDQNG NNTRSL
Arabidopsis Description
AGL103Agamous-like MADS-box protein AGL103 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSB2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.