Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16529 | Canola | nucleus | 92.94 | 90.58 |
| CDY32839 | Canola | nucleus | 86.62 | 87.59 |
| CDX77232 | Canola | nucleus | 86.62 | 87.59 |
| CDY67845 | Canola | nucleus | 84.39 | 85.34 |
| CDY12757 | Canola | nucleus | 29.0 | 48.75 |
| CDY28103 | Canola | plastid | 44.61 | 48.58 |
| CDY50510 | Canola | nucleus | 40.89 | 48.03 |
| CDY49671 | Canola | mitochondrion, nucleus | 40.89 | 46.41 |
| CDX93668 | Canola | nucleus | 40.89 | 45.64 |
| CDY54756 | Canola | nucleus | 27.14 | 36.87 |
| CDX70208 | Canola | nucleus | 27.51 | 36.82 |
| CDY44873 | Canola | nucleus | 27.14 | 36.32 |
| CDX85396 | Canola | nucleus | 38.29 | 36.14 |
| AT5G49490.1 | Thale cress | nucleus | 36.06 | 34.04 |
| CDY12741 | Canola | nucleus | 34.2 | 33.45 |
| CDY40477 | Canola | nucleus | 30.11 | 32.79 |
| CDY46277 | Canola | nucleus | 26.77 | 32.43 |
| CDX85418 | Canola | nucleus | 31.23 | 32.06 |
| AT5G38620.1 | Thale cress | nucleus | 39.78 | 30.66 |
| CDY12872 | Canola | nucleus | 29.37 | 30.62 |
| AT5G49420.1 | Thale cress | nucleus | 37.55 | 30.24 |
| CDX86226 | Canola | nucleus | 33.09 | 30.07 |
| CDY01199 | Canola | nucleus | 31.97 | 29.25 |
| CDX86252 | Canola | nucleus | 32.71 | 28.95 |
| CDY25046 | Canola | nucleus | 16.73 | 17.11 |
| CDY50584 | Canola | nucleus | 15.99 | 16.35 |
| CDY12742 | Canola | cytosol, mitochondrion, nucleus | 1.49 | 7.41 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078FU55 | UniProt:A0A078FU55 | EnsemblPlants:CDY16511 | ProteinID:CDY16511 |
| ProteinID:CDY16511.1 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00091115001 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF277 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EEB877 |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g02560DBnaA08g02560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FU55]
Coordinates
chrLK032064:-:612322..613131
Molecular Weight (calculated)
29567.6 Da
IEP (calculated)
4.294
GRAVY (calculated)
-0.369
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKRGGTKRK AEIKKITDKS SKAVTFTKRR DGLFSKAAQL CLLGDAQIAI LATPSSSHSN VSFFSFGHSS VDSVVSAYLS GQRPAPPPVP EDSKEMREDI
101: AVCMARKELG LGYWWEDEEL LAGKSREEIM EAMESMQILW KAAERLREDE AIDFDQREKM EDMSNDQTTL ISTEDDQIIA VCDSFFNNNN AASLSATPHG
201: EDDHHHQIEA VSENYCSNNM NALLSPAAAA GGGLNDQNLL DLDLANLDLD TIFEGLADLD AEFVASLLM
101: AVCMARKELG LGYWWEDEEL LAGKSREEIM EAMESMQILW KAAERLREDE AIDFDQREKM EDMSNDQTTL ISTEDDQIIA VCDSFFNNNN AASLSATPHG
201: EDDHHHQIEA VSENYCSNNM NALLSPAAAA GGGLNDQNLL DLDLANLDLD TIFEGLADLD AEFVASLLM
001: MVKKGGTKRK IAIETIQKRD SLRVTCTKRR EGLYSKASQL CLLSDAQIAI LATPPSSESN VSFYSFGHSS VDAVVSAFLS GQRPVPKDNK ETREDVGICL
101: TRNNLGLGFW WNDESLARSE NPQEISEAID SMRTLLRNLK ELRADEALAC NQAFVNDRED LKNNDKCDFV SDHETHDQTL ILQSASPICC IPENLNEITQ
201: EPNQTLNIQS STSAICCVPD NSPENFNEIT EEQDQIRSIC ETFCVMDNNA ALPEMNLDYD QDIGFDTPFE SALNDWFSDN TTHQEISASI LNAVVDDQVS
301: VDLTPFSYFQ RCLDGDNLRF SDCFKDFANT ISAL
101: TRNNLGLGFW WNDESLARSE NPQEISEAID SMRTLLRNLK ELRADEALAC NQAFVNDRED LKNNDKCDFV SDHETHDQTL ILQSASPICC IPENLNEITQ
201: EPNQTLNIQS STSAICCVPD NSPENFNEIT EEQDQIRSIC ETFCVMDNNA ALPEMNLDYD QDIGFDTPFE SALNDWFSDN TTHQEISASI LNAVVDDQVS
301: VDLTPFSYFQ RCLDGDNLRF SDCFKDFANT ISAL
Arabidopsis Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:Q7X9H5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.