CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75976
CDX92256
CDX95509
CDX99332
CDY06478
CDY18534
CDY25046
CDY33964
CDY37821
CDY50584

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60880.1	CDY25046	AT1G48150.1	15805477
AT1G60880.1	CDY50584	AT1G48150.1	15805477
AT1G60880.1	CDX75976	AT3G18650.1	15805477
AT1G60880.1	CDX92256	AT3G18650.1	15805477
AT1G60880.1	CDX95509	AT3G18650.1	15805477
AT1G60880.1	CDX99332	AT3G18650.1	15805477
AT1G60880.1	CDY18534	AT3G18650.1	15805477
AT1G60880.1	CDY33964	AT4G11250.1	15805477
AT1G60880.1	CDY37821	AT4G11250.1	15805477
AT1G60880.1	CDY33964	AT5G65330.1	15805477
AT1G60880.1	CDY37821	AT5G65330.1	15805477
AT1G60920.1	CDY25046	AT1G48150.1	15805477
AT1G60920.1	CDY50584	AT1G48150.1	15805477
AT1G60920.1	CDX75976	AT3G18650.1	15805477
AT1G60920.1	CDX92256	AT3G18650.1	15805477
AT1G60920.1	CDX95509	AT3G18650.1	15805477
AT1G60920.1	CDX99332	AT3G18650.1	15805477
AT1G60920.1	CDY18534	AT3G18650.1	15805477
AT1G60920.1	CDY33964	AT4G11250.1	15805477
AT1G60920.1	CDY37821	AT4G11250.1	15805477
AT1G60920.1	CDY06478	AT4G14640.1	17360592
AT1G60920.1	CDY33964	AT5G65330.1	15805477
AT1G60920.1	CDY37821	AT5G65330.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12872	Canola	nucleus	89.07	85.27
AT1G60920.1	Thale cress	nucleus	42.91	55.5
CDY54756	Canola	nucleus	40.49	50.51
AT1G60880.1	Thale cress	nucleus	38.06	46.77
CDX70208	Canola	nucleus	29.15	35.82
CDY44873	Canola	nucleus	28.34	34.83
CDY12757	Canola	nucleus	21.05	32.5
CDY28103	Canola	plastid	31.58	31.58
CDY50510	Canola	nucleus	28.74	31.0
CDX93668	Canola	nucleus	29.55	30.29
CDY16511	Canola	nucleus	32.79	30.11
CDY16529	Canola	nucleus	33.2	29.71
CDY67845	Canola	nucleus	31.58	29.32
CDY49671	Canola	mitochondrion, nucleus	27.94	29.11
CDY32839	Canola	nucleus	31.17	28.95
CDX77232	Canola	nucleus	31.17	28.95
CDX85418	Canola	nucleus	27.13	25.57
CDX85396	Canola	nucleus	27.94	24.21
CDY12741	Canola	nucleus	25.51	22.91
CDX86226	Canola	nucleus	27.13	22.64
CDX86252	Canola	nucleus	27.53	22.37
CDY46277	Canola	nucleus	18.62	20.72
CDY01199	Canola	nucleus	23.08	19.39
CDY25046	Canola	nucleus	14.57	13.69
CDY50584	Canola	nucleus	13.77	12.93
CDY12742	Canola	cytosol, mitochondrion, nucleus	1.62	7.41

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078HRL9	UniProt:A0A078HRL9	EnsemblPlants:CDY40477	ProteinID:CDY40477
ProteinID:CDY40477.1	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00069732001	InterPro:IPR002100
InterPro:IPR036879	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF277	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EED83B
SEG:seg	:	:	:	:	:

Description

BnaC09g14350DBnaC09g14350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRL9]

Coordinates

chrLK032472:+:44530..45273

Molecular Weight (calculated)

27453.0 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.539

Length

247 amino acids

Sequence
(BLAST)

001: MNVHTNDACF LTIIIMGGEK RKIDIKFIED KAVRSVTFCK RRDGLFSKAS ELCLLSPATQ IAILATPPST NSHAGFYSFG HSSVDHVVSS LLHDQSPGDP
101: TNQVENRRLG FWWEDQALER LESVDELRDA TDAVTRMLNN VRLRLDAVKG NQRGGALVIH QEEARAPKIR NTNKEKTNQI TNSESSCGLV IHQDEVPQLC
201: NTNTNYKNEE TTTQVANSEG ASGSGSSVEK NDDILHIDDL DIDDFFH

Best Arabidopsis Sequence Match ( AT1G60920.1 )
(BLAST)

001: MGGTKRKIEM KRIEDKNVRA VAFTKRKSGL FHKASELCLL SPGTQIAILA TPLSSHSHAS FYSFGHSSVD HVVSSLLHNQ HPSLPTNQDN RSGLGFWWED
101: QAFDRLENVD ELKEAVDAVS RMLNNVRLRL DDAVKSNQRD GSLVIHQEDE EVLQLGYKDT NQITKLEGET SASASLLKNV VDNLHIDDRY Y

Arabidopsis Description

AGL55AGAMOUS-like 55 [Source:UniProtKB/TrEMBL;Acc:Q9C960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.