Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12741 | Canola | nucleus | 76.88 | 44.73 |
| CDY01199 | Canola | nucleus | 66.88 | 36.39 |
| CDY28103 | Canola | plastid | 46.88 | 30.36 |
| CDY44873 | Canola | nucleus | 38.12 | 30.35 |
| CDY67845 | Canola | nucleus | 50.0 | 30.08 |
| CDX85396 | Canola | nucleus | 53.12 | 29.82 |
| CDX77232 | Canola | nucleus | 49.38 | 29.7 |
| CDY32839 | Canola | nucleus | 49.38 | 29.7 |
| CDY16511 | Canola | nucleus | 48.75 | 29.0 |
| CDY16529 | Canola | nucleus | 50.0 | 28.99 |
| CDX70208 | Canola | nucleus | 36.25 | 28.86 |
| CDX85418 | Canola | nucleus | 46.88 | 28.63 |
| CDY54756 | Canola | nucleus | 34.38 | 27.78 |
| CDY50510 | Canola | nucleus | 39.38 | 27.51 |
| CDY49671 | Canola | mitochondrion, nucleus | 40.62 | 27.43 |
| CDX93668 | Canola | nucleus | 40.62 | 26.97 |
| CDX86226 | Canola | nucleus | 46.88 | 25.34 |
| AT5G49490.1 | Thale cress | nucleus | 43.12 | 24.21 |
| CDX86252 | Canola | nucleus | 45.62 | 24.01 |
| AT5G49420.1 | Thale cress | nucleus | 48.75 | 23.35 |
| CDY46277 | Canola | nucleus | 31.88 | 22.97 |
| AT5G38620.1 | Thale cress | nucleus | 47.5 | 21.78 |
| CDY40477 | Canola | nucleus | 32.5 | 21.05 |
| CDY12872 | Canola | nucleus | 32.5 | 20.16 |
| CDY12742 | Canola | cytosol, mitochondrion, nucleus | 4.38 | 12.96 |
| CDY50584 | Canola | nucleus | 19.38 | 11.79 |
| CDY25046 | Canola | nucleus | 18.75 | 11.41 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078FIG8 | UniProt:A0A078FIG8 | EnsemblPlants:CDY12757 | ProteinID:CDY12757 |
| ProteinID:CDY12757.1 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00070348001 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF277 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EEE958 |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g28840DBnaC04g28840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIG8]
Coordinates
chrLK032026:-:710788..711332
Molecular Weight (calculated)
17758.8 Da
IEP (calculated)
6.950
GRAVY (calculated)
-0.706
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKGTKRKAT MEKITKRESA ATTFTKRSFG LHSKVSQLCL LTGAQIAVLA TPPSANSNVS FFSFGHSSVD SIVNAFLTGE RPAVREEIDD HEEDLGICLA
101: RKELGLPQWL EDDSLLKSKN PQELRRGRAS SEETEEEERR DNAENRTHGA TNPSSPVRFQ
101: RKELGLPQWL EDDSLLKSKN PQELRRGRAS SEETEEEERR DNAENRTHGA TNPSSPVRFQ
001: MVKGTKRKIA IETIQKRDSL RVTCTKRRKG LYSKASQLCL LSDAQIAILA TPPSSESDVS FYSFGHSSVD AVVSAFLSGK RPVSAPKDNK ETREDVGICL
101: TRKNLGLGFW WNDESLVRSE NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC CIPENLNDIT QEPNQTLDIQ
201: SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV
301: DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV
101: TRKNLGLGFW WNDESLVRSE NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC CIPENLNDIT QEPNQTLDIQ
201: SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV
301: DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV
Arabidopsis Description
MADS-box protein AGL73 [Source:UniProtKB/TrEMBL;Acc:Q9FFV9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.