Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025609.1-P | Field mustard | nucleus | 96.73 | 96.73 |
| CDY65583 | Canola | plastid | 60.12 | 70.38 |
| CDY36823 | Canola | nucleus | 59.52 | 65.57 |
| CDY68883 | Canola | nucleus | 55.36 | 62.63 |
| CDY44595 | Canola | nucleus | 57.74 | 60.81 |
| CDY36817 | Canola | plastid | 51.79 | 59.59 |
| CDY30838 | Canola | nucleus | 63.1 | 59.22 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 41.07 | 41.82 |
| CDY44597 | Canola | nucleus | 29.46 | 41.77 |
| AT5G40220.1 | Thale cress | nucleus | 38.99 | 40.43 |
| AT5G39750.1 | Thale cress | nucleus | 39.88 | 37.75 |
| AT5G40120.1 | Thale cress | nucleus | 40.18 | 35.06 |
| AT5G39810.1 | Thale cress | plastid | 33.33 | 34.04 |
| AT5G38740.1 | Thale cress | nucleus | 42.56 | 33.57 |
| AT5G37415.1 | Thale cress | nucleus | 31.25 | 33.23 |
| CDY37821 | Canola | nucleus | 26.79 | 32.61 |
| CDY33964 | Canola | nucleus | 27.38 | 31.83 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 19.94 | 27.24 |
| CDY63010 | Canola | plastid | 4.46 | 24.19 |
| CDX99332 | Canola | plastid | 24.4 | 23.03 |
| CDY63012 | Canola | cytosol | 13.39 | 22.5 |
| CDX92256 | Canola | plastid | 24.4 | 22.16 |
| CDX95509 | Canola | plastid | 18.75 | 21.8 |
| CDX93744 | Canola | nucleus | 17.56 | 20.7 |
| CDX73406 | Canola | plastid | 17.26 | 20.57 |
| CDY18533 | Canola | nucleus | 4.46 | 20.55 |
| CDX93682 | Canola | nucleus | 14.29 | 19.83 |
| CDX93743 | Canola | nucleus | 14.58 | 18.63 |
| CDX93708 | Canola | nucleus | 15.18 | 18.48 |
| CDY28851 | Canola | nucleus | 15.48 | 18.31 |
| CDX73409 | Canola | nucleus | 12.5 | 18.26 |
| CDY40199 | Canola | nucleus | 13.1 | 16.86 |
| CDY67867 | Canola | mitochondrion | 20.24 | 16.11 |
| CDY27890 | Canola | nucleus | 14.88 | 15.67 |
| CDY56522 | Canola | nucleus | 10.71 | 15.45 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 14.29 | 14.12 |
| CDX75976 | Canola | mitochondrion, nucleus | 5.06 | 8.37 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078I552 | UniProt:A0A078I552 | EnsemblPlants:CDY44599 | ProteinID:CDY44599 |
| ProteinID:CDY44599.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00080532001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EECE58 |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g09910DBnaA04g09910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I552]
Coordinates
chrLK032595:+:201051..202061
Molecular Weight (calculated)
38264.0 Da
IEP (calculated)
6.502
GRAVY (calculated)
-0.644
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPPSPRPSP SSKCSSSSSS SYSLAATSLN SRLLTVFKKA QELTTLCDIE ACVIHYGPDG ELKTWPEDRD KVKDLALRYI QLDKAKRRKK SVNLHEFLNK
101: MEDKKTMLHK FKKRAKKNVE VLKYPISVHY SPDQINQLIQ SLELSYSKLQ ERHRFLAAKK QNESLNPNQF KQLPQESVLK NHEVCVNDQN NNFQHLCVSA
201: VQESGGSNYQ LMMPYSGGYD QSMCTVNNFQ DPCVSNIQDY SVFPPELQES VSNYAFNQLM QHELFGFDQN MCMGDTTNSF NVVDPCLSDD FCFDFQDPYG
301: ANMVGNPSFS QDFYPDMSSS SVDENRLLQA STLPSL
101: MEDKKTMLHK FKKRAKKNVE VLKYPISVHY SPDQINQLIQ SLELSYSKLQ ERHRFLAAKK QNESLNPNQF KQLPQESVLK NHEVCVNDQN NNFQHLCVSA
201: VQESGGSNYQ LMMPYSGGYD QSMCTVNNFQ DPCVSNIQDY SVFPPELQES VSNYAFNQLM QHELFGFDQN MCMGDTTNSF NVVDPCLSDD FCFDFQDPYG
301: ANMVGNPSFS QDFYPDMSSS SVDENRLLQA STLPSL
001: MTMRSSSPSS SSSYSLAFTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPKE KEKVRDIALR YSLLNEALRR KKSVNLHGFL NKKKNKGLKN
101: PNKKMKTSLK NVNILKYPLA DHYPPDQVSP LIQSLELHVS KFQERLRFLE SQKQNQTKPD HQSLTPSSLN HYTQSLNPSQ FSLFMYNHGD NTLSQIPVSA
201: SNFNQDYFSA LLEESELKNQ LMKPEICGYD QNQNMSMGDI TNNKFQDPCV SNKEAVQESV NNFGLNQLMY KEFYGCDQNM SMGNINSNSF QNPCVSNTQH
301: YSAVEESVKN PWLNQLMQNE LYGYGYAGFC
101: PNKKMKTSLK NVNILKYPLA DHYPPDQVSP LIQSLELHVS KFQERLRFLE SQKQNQTKPD HQSLTPSSLN HYTQSLNPSQ FSLFMYNHGD NTLSQIPVSA
201: SNFNQDYFSA LLEESELKNQ LMKPEICGYD QNQNMSMGDI TNNKFQDPCV SNKEAVQESV NNFGLNQLMY KEFYGCDQNM SMGNINSNSF QNPCVSNTQH
301: YSAVEESVKN PWLNQLMQNE LYGYGYAGFC
Arabidopsis Description
AGL75Agamous-like MADS-box protein AGL75 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLL0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.