Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36823 | Canola | nucleus | 70.03 | 68.2 |
| CDY36817 | Canola | plastid | 64.65 | 65.75 |
| CDY44595 | Canola | nucleus | 66.33 | 61.76 |
| CDY30838 | Canola | nucleus | 71.04 | 58.94 |
| CDY65583 | Canola | plastid | 53.87 | 55.75 |
| CDY44599 | Canola | nucleus | 62.63 | 55.36 |
| CDY44597 | Canola | nucleus | 36.36 | 45.57 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 43.1 | 38.79 |
| AT5G40220.1 | Thale cress | nucleus | 41.08 | 37.65 |
| AT5G39750.1 | Thale cress | nucleus | 42.76 | 35.77 |
| AT5G39810.1 | Thale cress | plastid | 36.36 | 32.83 |
| AT5G40120.1 | Thale cress | nucleus | 41.75 | 32.21 |
| CDY33964 | Canola | nucleus | 29.29 | 30.1 |
| AT5G37415.1 | Thale cress | nucleus | 31.99 | 30.06 |
| AT5G38740.1 | Thale cress | nucleus | 43.1 | 30.05 |
| CDY37821 | Canola | nucleus | 27.27 | 29.35 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 21.55 | 26.02 |
| CDY63010 | Canola | plastid | 5.39 | 25.81 |
| CDY63012 | Canola | cytosol | 14.48 | 21.5 |
| CDX99332 | Canola | plastid | 24.58 | 20.51 |
| CDX92256 | Canola | plastid | 24.92 | 20.0 |
| CDX73406 | Canola | plastid | 18.52 | 19.5 |
| CDX95509 | Canola | plastid | 18.86 | 19.38 |
| CDX93744 | Canola | nucleus | 18.52 | 19.3 |
| CDY18533 | Canola | nucleus | 4.71 | 19.18 |
| CDX93682 | Canola | nucleus | 14.81 | 18.18 |
| CDY40199 | Canola | nucleus | 15.82 | 18.01 |
| CDY28851 | Canola | nucleus | 16.5 | 17.25 |
| CDX93708 | Canola | nucleus | 15.49 | 16.67 |
| CDX73409 | Canola | nucleus | 12.79 | 16.52 |
| CDX93743 | Canola | nucleus | 14.48 | 16.35 |
| CDY56522 | Canola | nucleus | 12.46 | 15.88 |
| CDY67867 | Canola | mitochondrion | 22.22 | 15.64 |
| CDY27890 | Canola | nucleus | 15.82 | 14.73 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 14.81 | 12.94 |
| CDX75976 | Canola | mitochondrion, nucleus | 4.71 | 6.9 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078JN08 | UniProt:A0A078JN08 | EnsemblPlants:CDY68883 | ProteinID:CDY68883 |
| ProteinID:CDY68883.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00080958001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF350 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE0C2C | SEG:seg |
Description
BnaCnng60900DBnaCnng60900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JN08]
Coordinates
chrLK038197:-:896..1866
Molecular Weight (calculated)
34222.4 Da
IEP (calculated)
6.611
GRAVY (calculated)
-0.729
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPPRSSSCS KCSSASSSSY SLAATSLKSR LLTIFKKAQE LTTLCDIEAC VIHYGPDGEL RTWPENRDIV RSLALRYIQL DQAKRRKKSV NLYEFLNKNK
101: DKKTMLNKFK KRNVEELKYP ISDHYSPDQI NQLIHSLELS YSTLQERRRF LAAKANLEDR QHSMNPSQFT PLPQELYVND KNNTFQHLCV SDYSEVQESA
201: LRYQLMPYGG YDQNMCMGNI NNVQHPWVSN AQPPELQEPN QLMQHEPYGF DQNMCMGDTT NSCNVVDPCL PNMLPDDFCF DFQDPYGGNM ESTLPSL
101: DKKTMLNKFK KRNVEELKYP ISDHYSPDQI NQLIHSLELS YSTLQERRRF LAAKANLEDR QHSMNPSQFT PLPQELYVND KNNTFQHLCV SDYSEVQESA
201: LRYQLMPYGG YDQNMCMGNI NNVQHPWVSN AQPPELQEPN QLMQHEPYGF DQNMCMGDTT NSCNVVDPCL PNMLPDDFCF DFQDPYGGNM ESTLPSL
001: MTMRSLPFSS SSYSLASTSL SNRLETIFKK ASELCTLCDI EACVIYYGPD GELKTWPKEK EKVRDIALRY SQLNEALRSK KSVNLHGFLN KKKKKKKKGL
101: KNPNNKRKTC LKKNVNVLKY PLADHYPPDQ VSQLTQSLKL HVSKFQERLR FLESQKQTKP DHQSLTPSSL NHQTQSLNPR QFSLFMYNHG DNTLSQISVS
201: ASNFNQNYFS ALLEQSELKN QLMKQDGYDQ NQNMRMGDIT NNNFQLPYFS KKEAVQESVN YFGMNQLMLK ELYGCDQNMC MGNINSNSFQ HPCVSKAQHY
301: SAVEGSVNNQ RQSELMQQEL CGYEQNMCFT NNNFQVSNKE AVQESVTNFG LMQHELYGCD QNMSMGNIIN NSFQQRLKHR TRICE
101: KNPNNKRKTC LKKNVNVLKY PLADHYPPDQ VSQLTQSLKL HVSKFQERLR FLESQKQTKP DHQSLTPSSL NHQTQSLNPR QFSLFMYNHG DNTLSQISVS
201: ASNFNQNYFS ALLEQSELKN QLMKQDGYDQ NQNMRMGDIT NNNFQLPYFS KKEAVQESVN YFGMNQLMLK ELYGCDQNMC MGNINSNSFQ HPCVSKAQHY
301: SAVEGSVNNQ RQSELMQQEL CGYEQNMCFT NNNFQVSNKE AVQESVTNFG LMQHELYGCD QNMSMGNIIN NSFQQRLKHR TRICE
Arabidopsis Description
AGL76AGAMOUS-like 76 [Source:UniProtKB/TrEMBL;Acc:Q9FL19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.