Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93668 | Canola | nucleus | 84.28 | 80.08 |
| CDY49671 | Canola | mitochondrion, nucleus | 81.66 | 78.9 |
| Bra018727.1-P | Field mustard | nucleus | 75.55 | 70.61 |
| CDY28103 | Canola | plastid | 69.87 | 64.78 |
| CDY67845 | Canola | nucleus | 47.6 | 40.98 |
| CDY16511 | Canola | nucleus | 48.03 | 40.89 |
| CDY16529 | Canola | nucleus | 48.03 | 39.86 |
| CDY32839 | Canola | nucleus | 46.29 | 39.85 |
| CDX77232 | Canola | nucleus | 46.29 | 39.85 |
| CDY12757 | Canola | nucleus | 27.51 | 39.38 |
| CDX70208 | Canola | nucleus | 32.75 | 37.31 |
| CDY44873 | Canola | nucleus | 32.75 | 37.31 |
| CDY54756 | Canola | nucleus | 30.57 | 35.35 |
| CDX85396 | Canola | nucleus | 37.12 | 29.82 |
| CDY12741 | Canola | nucleus | 35.81 | 29.82 |
| CDX85418 | Canola | nucleus | 34.06 | 29.77 |
| CDY40477 | Canola | nucleus | 31.0 | 28.74 |
| CDX86226 | Canola | nucleus | 36.68 | 28.38 |
| CDX86252 | Canola | nucleus | 37.12 | 27.96 |
| CDY12872 | Canola | nucleus | 30.57 | 27.13 |
| CDY46277 | Canola | nucleus | 25.76 | 26.58 |
| AT5G49490.1 | Thale cress | nucleus | 31.44 | 25.26 |
| CDY01199 | Canola | nucleus | 32.31 | 25.17 |
| AT5G49420.1 | Thale cress | nucleus | 36.68 | 25.15 |
| AT5G38620.1 | Thale cress | nucleus | 37.99 | 24.93 |
| CDY25046 | Canola | nucleus | 20.96 | 18.25 |
| CDY50584 | Canola | nucleus | 19.65 | 17.11 |
| CDY12742 | Canola | cytosol, mitochondrion, nucleus | 0.87 | 3.7 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078IHR3 | UniProt:A0A078IHR3 | EnsemblPlants:CDY50510 | ProteinID:CDY50510 |
| ProteinID:CDY50510.1 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00096909001 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF277 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0004EE0E31 | SEG:seg | : | : | : | : |
Description
BnaC01g44480DBnaC01g44480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHR3]
Coordinates
chrLK032918:-:92075..92818
Molecular Weight (calculated)
25423.5 Da
IEP (calculated)
4.063
GRAVY (calculated)
-0.522
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKGGTKRKP EMKKITNKAS RATTFSKRRD GLYSKAAQLC VLSDAQIAIL ATPSSSSNSN ASFFSFGHSS VESVVSAYLA GQRLPPVSSS RFWWDDDKLA
101: NSKNPEELME AMESMKVLMS HLKGLEDQTL STVDQSPDLD EWSEMELTQL LQDCDDVPPP PPLVSNTDKE EEDQTVSDNN NNNSVSSLPA AAEKSLEEVT
201: MDLDFDTIFE GLLSYDDEDL FWSDDLLFM
101: NSKNPEELME AMESMKVLMS HLKGLEDQTL STVDQSPDLD EWSEMELTQL LQDCDDVPPP PPLVSNTDKE EEDQTVSDNN NNNSVSSLPA AAEKSLEEVT
201: MDLDFDTIFE GLLSYDDEDL FWSDDLLFM
001: MGGVKRKIAI EKIQNKNPRA VSFSKRRKGL YSKASELCLL SDAEIAIIAT PVSSNSNAAF YSFGHSSVDN VVAAFLANQR PCDERFWWED ESLLKSENLE
101: ELREAMDSMS TMLRDLKELE KQRDHQTQTL IHQPCSARVC IQDYVTVNFD GFNTEEQTLA VSDNSNNNGL LGNLDECNED FDDLDQIFDT VTNSEFLSVN
201: LEMDDVTVNS EGNTEEQTLA VSDNSNNNGL LGNLDECNED FDDLDQIIEY LTSSEALSMN LKMDDV
101: ELREAMDSMS TMLRDLKELE KQRDHQTQTL IHQPCSARVC IQDYVTVNFD GFNTEEQTLA VSDNSNNNGL LGNLDECNED FDDLDQIFDT VTNSEFLSVN
201: LEMDDVTVNS EGNTEEQTLA VSDNSNNNGL LGNLDECNED FDDLDQIIEY LTSSEALSMN LKMDDV
Arabidopsis Description
AGL97Agamous-like MADS-box protein AGL97 [Source:UniProtKB/Swiss-Prot;Acc:Q9C633]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.