Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32839 | Canola | nucleus | 94.74 | 94.74 |
| CDX77232 | Canola | nucleus | 94.74 | 94.74 |
| CDY16529 | Canola | nucleus | 89.1 | 85.87 |
| CDY16511 | Canola | nucleus | 85.34 | 84.39 |
| CDY12757 | Canola | nucleus | 30.08 | 50.0 |
| CDY28103 | Canola | plastid | 44.36 | 47.77 |
| CDY49671 | Canola | mitochondrion, nucleus | 42.48 | 47.68 |
| CDY50510 | Canola | nucleus | 40.98 | 47.6 |
| CDX93668 | Canola | nucleus | 40.98 | 45.23 |
| CDY54756 | Canola | nucleus | 27.82 | 37.37 |
| CDX85396 | Canola | nucleus | 39.85 | 37.19 |
| CDX70208 | Canola | nucleus | 27.82 | 36.82 |
| CDY44873 | Canola | nucleus | 27.44 | 36.32 |
| AT5G49490.1 | Thale cress | nucleus | 37.22 | 34.74 |
| CDX85418 | Canola | nucleus | 33.46 | 33.97 |
| CDY12741 | Canola | nucleus | 34.21 | 33.09 |
| CDY40477 | Canola | nucleus | 29.32 | 31.58 |
| CDY46277 | Canola | nucleus | 25.94 | 31.08 |
| CDX86226 | Canola | nucleus | 34.21 | 30.74 |
| CDY01199 | Canola | nucleus | 33.83 | 30.61 |
| AT5G38620.1 | Thale cress | nucleus | 39.47 | 30.09 |
| CDY12872 | Canola | nucleus | 28.95 | 29.84 |
| CDX86252 | Canola | nucleus | 33.46 | 29.28 |
| AT5G49420.1 | Thale cress | nucleus | 36.47 | 29.04 |
| CDY25046 | Canola | nucleus | 16.17 | 16.35 |
| CDY50584 | Canola | nucleus | 16.17 | 16.35 |
| CDY12742 | Canola | cytosol, mitochondrion, nucleus | 2.26 | 11.11 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078JN16 | UniProt:A0A078JN16 | EnsemblPlants:CDY67845 | ProteinID:CDY67845 |
| ProteinID:CDY67845.1 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00066948001 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF277 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE5C7A |
| SEG:seg | : | : | : | : | : |
Description
BnaUnng02600DBnaUnng02600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JN16]
Coordinates
chrLK036569:-:6452..7252
Molecular Weight (calculated)
29456.5 Da
IEP (calculated)
4.665
GRAVY (calculated)
-0.459
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKRGGTKRK AEIKKITDKS SKAVTFTKRR DGLFSKAAQL CLLGDAQIAI LATPSSSHSN VSFFSFGHSS VDSVVSAYLS GQRPAPPPVP EDSREMREDI
101: AVCMARKELG LGYWWEDEKL LASKSREEIM EAMESMQILW KAAERLRDEY VVEFDRRKGS HEKKEDMSND QTTLISTEDD QIIAVCDSFF NYNNNNAALS
201: TTPPDEDEHH HQIEAVSENY CSNKNALLSP PAAAGGGLND LANVDLDTIF EGLADLDAEL VASFLM
101: AVCMARKELG LGYWWEDEKL LASKSREEIM EAMESMQILW KAAERLRDEY VVEFDRRKGS HEKKEDMSND QTTLISTEDD QIIAVCDSFF NYNNNNAALS
201: TTPPDEDEHH HQIEAVSENY CSNKNALLSP PAAAGGGLND LANVDLDTIF EGLADLDAEL VASFLM
001: MRFVPYLYEI ERLWLSLVNY LSPRKNKNRR CGEIDKIRMV KKGGTKRKIA IETIQKSDYL RVTCTKRREG LFSKASQLCL LSDAQIAILA TPPTSESNIS
101: FYSFGHSSVD AVVSSFLSGQ RCVPLQEDTK EMREDVAICL SRTNLGLGFW WNNESLNKSE NPQEISDAIN SMLTLLSNLK ELSGEEALVN DHKDLKKNER
201: SDVVLQHGTQ YETLNPNSNT TTICCVPDEL PANSNEIVGI SPNPLIMLEK KKSQIEEKFE KEWQVSVTRI ENEATSSYAK RRRSI
101: FYSFGHSSVD AVVSSFLSGQ RCVPLQEDTK EMREDVAICL SRTNLGLGFW WNNESLNKSE NPQEISDAIN SMLTLLSNLK ELSGEEALVN DHKDLKKNER
201: SDVVLQHGTQ YETLNPNSNT TTICCVPDEL PANSNEIVGI SPNPLIMLEK KKSQIEEKFE KEWQVSVTRI ENEATSSYAK RRRSI
Arabidopsis Description
AGL83AGAMOUS-like 83 [Source:UniProtKB/TrEMBL;Acc:Q9FGZ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.