Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G27050.1 | Thale cress | nucleus | 16.55 | 39.17 |
| AT5G26865.1 | Thale cress | nucleus | 16.55 | 37.3 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 19.01 | 28.88 |
| CDY56522 | Canola | nucleus | 21.13 | 25.75 |
| AT5G27580.1 | Thale cress | nucleus | 19.37 | 24.66 |
| CDY63010 | Canola | plastid | 5.28 | 24.19 |
| AT5G27944.1 | Thale cress | nucleus | 19.01 | 24.11 |
| CDY63012 | Canola | cytosol | 16.9 | 24.0 |
| CDX73406 | Canola | plastid | 23.24 | 23.4 |
| CDX93744 | Canola | nucleus | 22.89 | 22.81 |
| CDX93682 | Canola | nucleus | 19.37 | 22.73 |
| CDY40199 | Canola | nucleus | 20.07 | 21.84 |
| AT5G26950.1 | Thale cress | nucleus | 21.83 | 21.45 |
| CDX93708 | Canola | nucleus | 20.42 | 21.01 |
| AT5G27070.1 | Thale cress | nucleus | 20.07 | 19.86 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 16.2 | 18.7 |
| CDX93743 | Canola | nucleus | 17.25 | 18.63 |
| CDY27890 | Canola | nucleus | 20.77 | 18.5 |
| CDX73409 | Canola | nucleus | 14.44 | 17.83 |
| CDY67867 | Canola | mitochondrion | 26.41 | 17.77 |
| CDY68883 | Canola | nucleus | 17.25 | 16.5 |
| CDY36823 | Canola | nucleus | 16.9 | 15.74 |
| CDY65583 | Canola | plastid | 15.85 | 15.68 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 18.66 | 15.59 |
| CDY44599 | Canola | nucleus | 18.31 | 15.48 |
| CDX95509 | Canola | plastid | 15.49 | 15.22 |
| CDY37821 | Canola | nucleus | 14.79 | 15.22 |
| CDX92256 | Canola | plastid | 19.72 | 15.14 |
| CDY33964 | Canola | nucleus | 15.14 | 14.88 |
| CDY44595 | Canola | nucleus | 16.55 | 14.73 |
| CDY36817 | Canola | plastid | 15.14 | 14.73 |
| CDX99332 | Canola | plastid | 18.31 | 14.61 |
| CDY18533 | Canola | nucleus | 3.52 | 13.7 |
| CDY30838 | Canola | nucleus | 17.25 | 13.69 |
| CDX75976 | Canola | mitochondrion, nucleus | 4.93 | 6.9 |
| CDY44597 | Canola | nucleus | 4.58 | 5.49 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078GTM5 | UniProt:A0A078GTM5 | EnsemblPlants:CDY28851 | ProteinID:CDY28851 |
| ProteinID:CDY28851.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00041524001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF350 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF2B33 | SEG:seg |
Description
BnaC06g26390DBnaC06g26390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTM5]
Coordinates
chrLK032227:+:153399..154413
Molecular Weight (calculated)
31284.3 Da
IEP (calculated)
10.061
GRAVY (calculated)
-0.678
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMNKLLVRK DTIFKKPSSS LYNARAATVL KKAFELSELC GVDVCIIWYD HEGNLVKTWP ENEEAKVRAI AERYSMLSEE ERGKKRNNLS GFLNKKMIRD
101: KKESSSFALH RRRARRRPPP MSKKKKTKLL PSGDSPSGSA VSVDSTASVD STAPADSTAS APPSLMPISA DPAANIAVSP QHAMISATDD SVPEKKEHEV
201: QSSHIPVGEL PHLVSEPEQE KLSDVQLQPS KPSPNVITSQ TTLWRDKVKH NGGRLDPQGT PFLLDSGEPC VKIPNSVIEK NKKS
101: KKESSSFALH RRRARRRPPP MSKKKKTKLL PSGDSPSGSA VSVDSTASVD STAPADSTAS APPSLMPISA DPAANIAVSP QHAMISATDD SVPEKKEHEV
201: QSSHIPVGEL PHLVSEPEQE KLSDVQLQPS KPSPNVITSQ TTLWRDKVKH NGGRLDPQGT PFLLDSGEPC VKIPNSVIEK NKKS
001: MDSSTSTKKN TKLFVRNQTC FKKSSLSSSN AKKTTNLSMR EQTMFKKALE LSTLCDIEVC VIYYGRDGKL IKTWPEDQSK VRDMAERFSR LHERERCKKR
101: TNLSLFLRKQ ILHDKKLSEK VLEMEDSLES GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE
101: TNLSLFLRKQ ILHDKKLSEK VLEMEDSLES GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE
Arabidopsis Description
AGL54AGAMOUS-like 54 [Source:UniProtKB/TrEMBL;Acc:Q9S9U2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.