Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G27070.1 | Thale cress | nucleus | 82.35 | 82.93 |
| AT5G26865.1 | Thale cress | nucleus | 34.26 | 78.57 |
| AT5G27050.1 | Thale cress | nucleus | 31.14 | 75.0 |
| AT5G27944.1 | Thale cress | nucleus | 57.09 | 73.66 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 47.06 | 72.73 |
| AT5G27580.1 | Thale cress | nucleus | 54.67 | 70.85 |
| CDY63010 | Canola | plastid | 7.27 | 33.87 |
| Bra007138.1-P | Field mustard | nucleus | 29.07 | 29.89 |
| Bra004071.1-P | Field mustard | nucleus | 28.72 | 29.23 |
| CDX73406 | Canola | plastid | 28.37 | 29.08 |
| CDX93744 | Canola | nucleus | 28.03 | 28.42 |
| CDX73409 | Canola | nucleus | 22.49 | 28.26 |
| Bra020923.1-P | Field mustard | nucleus | 20.42 | 28.23 |
| Bra028019.1-P | Field mustard | nucleus | 27.68 | 28.07 |
| Bra018741.1-P | Field mustard | nucleus | 25.61 | 28.03 |
| CDX93682 | Canola | nucleus | 22.84 | 27.27 |
| CDX93708 | Canola | nucleus | 25.95 | 27.17 |
| AT4G02235.1 | Thale cress | nucleus | 18.34 | 27.04 |
| CDY63012 | Canola | cytosol | 18.69 | 27.0 |
| CDY40199 | Canola | nucleus | 23.88 | 26.44 |
| CDX93743 | Canola | nucleus | 23.88 | 26.24 |
| Bra028020.1-P | Field mustard | nucleus | 23.88 | 26.24 |
| CDY56522 | Canola | nucleus | 20.42 | 25.32 |
| CDY27890 | Canola | nucleus | 27.68 | 25.08 |
| Bra018767.1-P | Field mustard | nucleus | 26.3 | 24.84 |
| Bra015129.1-P | Field mustard | nucleus | 26.99 | 24.45 |
| CDY28851 | Canola | nucleus | 21.45 | 21.83 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 24.57 | 21.52 |
| Bra007139.1-P | Field mustard | nucleus | 12.46 | 21.18 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 24.57 | 20.88 |
| AT5G40220.1 | Thale cress | nucleus | 23.18 | 20.68 |
| CDY18533 | Canola | nucleus | 5.19 | 20.55 |
| AT5G39810.1 | Thale cress | plastid | 22.84 | 20.06 |
| AT5G39750.1 | Thale cress | nucleus | 23.88 | 19.44 |
| AT4G11250.1 | Thale cress | nucleus | 21.45 | 18.84 |
| AT5G65330.1 | Thale cress | nucleus | 21.8 | 18.48 |
| AT5G38740.1 | Thale cress | nucleus | 26.99 | 18.31 |
| AT5G40120.1 | Thale cress | nucleus | 23.88 | 17.92 |
| AT3G18650.1 | Thale cress | plastid | 22.84 | 17.1 |
| AT5G37415.1 | Thale cress | nucleus | 18.69 | 17.09 |
| CDY67867 | Canola | mitochondrion | 23.53 | 16.11 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:832753 | ProteinID:AAB61064.1 | ProteinID:AED93633.1 | Symbol:AGL93 |
| ArrayExpress:AT5G26950 | EnsemblPlantsGene:AT5G26950 | RefSeq:AT5G26950 | TAIR:AT5G26950 | RefSeq:AT5G26950-TAIR-G | EnsemblPlants:AT5G26950.1 |
| TAIR:AT5G26950.1 | EMBL:AY141228 | Unigene:At.64250 | EMBL:BT028900 | GO:GO:0000982 | GO:GO:0000987 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_198047.1 | PFAM:PF00319 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | UniProt:Q7X9H9 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00001625DB | SEG:seg | : | : |
Description
AGL93Agamous-like MADS-box protein AGL93 [Source:UniProtKB/Swiss-Prot;Acc:Q7X9H9]
Coordinates
chr5:-:9483251..9484142
Molecular Weight (calculated)
32756.9 Da
IEP (calculated)
8.466
GRAVY (calculated)
-0.630
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV CVIYYGRDGK LIKTWPDDQS KVRDMAERFS RLHERERCKK
101: RTNLSLFLRK KILDDTKLSE KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQR TEPLMSGVSN TEQDLSTSSL
201: SQNQSKFSVF LYNHDNCSFY QVPDSVSSFD SLTSTGLLGE QGSGLGSSFD LPMVFPPQMQ TQTPLVPFDQ FAPWNQAPSF ADPMMFPYN
101: RTNLSLFLRK KILDDTKLSE KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQR TEPLMSGVSN TEQDLSTSSL
201: SQNQSKFSVF LYNHDNCSFY QVPDSVSSFD SLTSTGLLGE QGSGLGSSFD LPMVFPPQMQ TQTPLVPFDQ FAPWNQAPSF ADPMMFPYN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.