Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G26865.1 | Thale cress | nucleus | 52.94 | 78.57 |
| AT5G27050.1 | Thale cress | nucleus | 48.13 | 75.0 |
| AT5G27944.1 | Thale cress | nucleus | 72.73 | 60.71 |
| AT5G27580.1 | Thale cress | nucleus | 64.71 | 54.26 |
| AT5G27070.1 | Thale cress | nucleus | 75.4 | 49.13 |
| AT5G26950.1 | Thale cress | nucleus | 72.73 | 47.06 |
| CDY63010 | Canola | plastid | 12.3 | 37.1 |
| Bra020923.1-P | Field mustard | nucleus | 31.55 | 28.23 |
| CDY63012 | Canola | cytosol | 27.81 | 26.0 |
| AT4G02235.1 | Thale cress | nucleus | 25.67 | 24.49 |
| Bra018741.1-P | Field mustard | nucleus | 32.62 | 23.11 |
| Bra007138.1-P | Field mustard | nucleus | 33.16 | 22.06 |
| CDX73406 | Canola | plastid | 33.16 | 21.99 |
| CDX93682 | Canola | nucleus | 28.34 | 21.9 |
| Bra028019.1-P | Field mustard | nucleus | 33.16 | 21.75 |
| CDX93744 | Canola | nucleus | 33.16 | 21.75 |
| Bra004071.1-P | Field mustard | nucleus | 32.09 | 21.13 |
| CDX93708 | Canola | nucleus | 30.48 | 20.65 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 35.29 | 20.0 |
| AT5G40220.1 | Thale cress | nucleus | 34.22 | 19.75 |
| CDY28851 | Canola | nucleus | 28.88 | 19.01 |
| Bra018767.1-P | Field mustard | nucleus | 31.02 | 18.95 |
| CDY27890 | Canola | nucleus | 32.09 | 18.81 |
| AT5G39810.1 | Thale cress | plastid | 32.62 | 18.54 |
| Bra015129.1-P | Field mustard | nucleus | 31.55 | 18.5 |
| CDY40199 | Canola | nucleus | 25.13 | 18.01 |
| CDX73409 | Canola | nucleus | 21.93 | 17.83 |
| AT5G65330.1 | Thale cress | nucleus | 32.09 | 17.6 |
| Bra028020.1-P | Field mustard | nucleus | 24.6 | 17.49 |
| CDX93743 | Canola | nucleus | 24.6 | 17.49 |
| AT4G11250.1 | Thale cress | nucleus | 30.48 | 17.33 |
| AT5G39750.1 | Thale cress | nucleus | 32.62 | 17.18 |
| AT5G40120.1 | Thale cress | nucleus | 35.29 | 17.14 |
| AT5G38740.1 | Thale cress | nucleus | 36.36 | 15.96 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 28.88 | 15.88 |
| CDY56522 | Canola | nucleus | 19.25 | 15.45 |
| AT3G18650.1 | Thale cress | plastid | 30.48 | 14.77 |
| AT5G37415.1 | Thale cress | nucleus | 24.6 | 14.56 |
| CDY67867 | Canola | mitochondrion | 32.09 | 14.22 |
| Bra007139.1-P | Field mustard | nucleus | 9.63 | 10.59 |
| CDY18533 | Canola | nucleus | 3.74 | 9.59 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:832767 | ProteinID:AAD48934.1 | ProteinID:AED93648.1 | Symbol:AGL54 |
| ArrayExpress:AT5G27090 | EnsemblPlantsGene:AT5G27090 | RefSeq:AT5G27090 | TAIR:AT5G27090 | RefSeq:AT5G27090-TAIR-G | EnsemblPlants:AT5G27090.1 |
| TAIR:AT5G27090.1 | EMBL:AY141218 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_198061.2 | PFAM:PF00319 | PO:PO:0020093 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | UniProt:Q9S9U2 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI00000A0A00 | SEG:seg | : | : | : |
Description
AGL54AGAMOUS-like 54 [Source:UniProtKB/TrEMBL;Acc:Q9S9U2]
Coordinates
chr5:+:9531740..9532697
Molecular Weight (calculated)
21739.0 Da
IEP (calculated)
9.224
GRAVY (calculated)
-0.796
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSTSTKKN TKLFVRNQTC FKKSSLSSSN AKKTTNLSMR EQTMFKKALE LSTLCDIEVC VIYYGRDGKL IKTWPEDQSK VRDMAERFSR LHERERCKKR
101: TNLSLFLRKQ ILHDKKLSEK VLEMEDSLES GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE
101: TNLSLFLRKQ ILHDKKLSEK VLEMEDSLES GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.