Factsheet for Bra020923.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra000392.1-P
Bra002368.1-P
Bra004927.1-P
Bra006595.1-P
Bra009436.1-P
Bra010027.1-P
Bra011509.1-P
Bra014217.1-P
Bra017638.1-P
Bra018296.1-P
Bra018727.1-P
Bra032767.1-P
Bra033467.1-P
Bra033492.1-P
Bra037434.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27050.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G27050.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G27050.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G27050.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G27050.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G27070.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G27070.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G27070.1	Bra000392.1-P	AT2G45650.1	15805477
AT5G27070.1	Bra004927.1-P	AT2G45650.1	15805477
AT5G27070.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G27070.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G27070.1	Bra011509.1-P	AT3G57230.1	15805477
AT5G27070.1	Bra017638.1-P	AT3G57230.1	15805477
AT5G27070.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G27070.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra010027.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra010027.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra014217.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra018727.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra032767.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra033492.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra037434.1-P	AT5G49490.1	15805477
AT5G27580.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G27580.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra037434.1-P	AT5G49420.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63012	Canola	cytosol	72.25	75.5
Bra015129.1-P	Field mustard	nucleus	94.26	61.76
Bra018767.1-P	Field mustard	nucleus	84.21	57.52
Bra018741.1-P	Field mustard	nucleus	67.94	53.79
AT5G26865.1	Thale cress	nucleus	25.36	42.06
AT5G27050.1	Thale cress	nucleus	22.97	40.0
AT5G27090.1	Thale cress	nucleus, plastid	28.23	31.55
Bra007138.1-P	Field mustard	nucleus	39.71	29.54
AT5G27944.1	Thale cress	nucleus	30.14	28.12
Bra028019.1-P	Field mustard	nucleus	36.36	26.67
AT5G27580.1	Thale cress	nucleus	27.75	26.01
Bra028020.1-P	Field mustard	nucleus	32.06	25.48
AT5G27070.1	Thale cress	nucleus	29.67	21.6
AT5G26950.1	Thale cress	nucleus	28.23	20.42
Bra004071.1-P	Field mustard	nucleus	26.79	19.72
Bra025609.1-P	Field mustard	nucleus	22.97	14.29
Bra037571.1-P	Field mustard	mitochondrion, nucleus, plastid	22.97	14.04
Bra022341.1-P	Field mustard	plastid	24.4	13.86
Bra031864.1-P	Field mustard	nucleus	21.53	13.6
Bra025607.1-P	Field mustard	nucleus	21.53	12.89
Bra025619.1-P	Field mustard	nucleus	20.1	11.44
Bra007139.1-P	Field mustard	nucleus	8.61	10.59

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra020923	EnsemblPlants:Bra020923.1	EnsemblPlants:Bra020923.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:M4DWM9	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF350	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002545A13	SEG:seg	:

Description

AT5G27944 (E=3e-026) | sequence-specific DNA binding / transcription factor

Coordinates

chrA08:+:11173998..11174627

Molecular Weight (calculated)

24256.7 Da

IEP (calculated)

8.200

GRAVY (calculated)

-0.813

Length

209 amino acids

Sequence
(BLAST)

001: MDSLSSSTST KMKNNNKLSV RNETRFKKSF LLLREKTVLK KALELSILCD NDICVIHYDR EGNLVNTYPE DQCQVKDILE RYNNLSDTEK IKKNTNLSQF
101: YNKKLVDEKR RSLTDAEERK KFTKKVGEFK GSLVDQLLVL QDRARYLLYS QDHQTKPDQS RCLAAMSEQN HNFSAPSSGF FPHNDFSSSL IDEEDPLMNF
201: CPPVTENRV

Best Arabidopsis Sequence Match ( AT5G27090.1 )
(BLAST)

001: MDSSTSTKKN TKLFVRNQTC FKKSSLSSSN AKKTTNLSMR EQTMFKKALE LSTLCDIEVC VIYYGRDGKL IKTWPEDQSK VRDMAERFSR LHERERCKKR
101: TNLSLFLRKQ ILHDKKLSEK VLEMEDSLES GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE

Arabidopsis Description

AGL54AGAMOUS-like 54 [Source:UniProtKB/TrEMBL;Acc:Q9S9U2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.