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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000214.1-P
Bra002368.1-P
Bra004071.1-P
Bra006595.1-P
Bra007138.1-P
Bra007139.1-P
Bra015129.1-P
Bra018296.1-P
Bra018741.1-P
Bra018767.1-P
Bra020923.1-P
Bra025607.1-P
Bra025609.1-P
Bra025619.1-P
Bra028019.1-P
Bra028020.1-P
Bra031864.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G38620.1 Bra031864.1-P AT4G11250.1 15805477
AT5G38620.1 Bra004071.1-P AT5G27070.1 15805477
AT5G38620.1 Bra007138.1-P AT5G27070.1 15805477
AT5G38620.1 Bra007139.1-P AT5G27070.1 15805477
AT5G38620.1 Bra015129.1-P AT5G27070.1 15805477
AT5G38620.1 Bra018741.1-P AT5G27070.1 15805477
AT5G38620.1 Bra018767.1-P AT5G27070.1 15805477
AT5G38620.1 Bra020923.1-P AT5G27070.1 15805477
AT5G38620.1 Bra028019.1-P AT5G27070.1 15805477
AT5G38620.1 Bra028020.1-P AT5G27070.1 15805477
AT5G38620.1 Bra004071.1-P AT5G27580.1 15805477
AT5G38620.1 Bra007138.1-P AT5G27580.1 15805477
AT5G38620.1 Bra007139.1-P AT5G27580.1 15805477
AT5G38620.1 Bra015129.1-P AT5G27580.1 15805477
AT5G38620.1 Bra018741.1-P AT5G27580.1 15805477
AT5G38620.1 Bra018767.1-P AT5G27580.1 15805477
AT5G38620.1 Bra020923.1-P AT5G27580.1 15805477
AT5G38620.1 Bra028019.1-P AT5G27580.1 15805477
AT5G38620.1 Bra028020.1-P AT5G27580.1 15805477
AT5G38620.1 Bra025607.1-P AT5G38740.1 15805477
AT5G38620.1 Bra025609.1-P AT5G38740.1 15805477
AT5G38620.1 Bra025619.1-P AT5G38740.1 15805477
AT5G38620.1 Bra025607.1-P AT5G40220.1 15805477
AT5G38620.1 Bra025609.1-P AT5G40220.1 15805477
AT5G38620.1 Bra025619.1-P AT5G40220.1 15805477
AT5G38620.1 Bra031864.1-P AT5G65330.1 15805477
AT5G49420.1 Bra031864.1-P AT4G11250.1 15805477
AT5G49420.1 Bra004071.1-P AT5G27070.1 15805477
AT5G49420.1 Bra007138.1-P AT5G27070.1 15805477
AT5G49420.1 Bra007139.1-P AT5G27070.1 15805477
AT5G49420.1 Bra015129.1-P AT5G27070.1 15805477
AT5G49420.1 Bra018741.1-P AT5G27070.1 15805477
AT5G49420.1 Bra018767.1-P AT5G27070.1 15805477
AT5G49420.1 Bra020923.1-P AT5G27070.1 15805477
AT5G49420.1 Bra028019.1-P AT5G27070.1 15805477
AT5G49420.1 Bra028020.1-P AT5G27070.1 15805477
AT5G49420.1 Bra004071.1-P AT5G27580.1 15805477
AT5G49420.1 Bra007138.1-P AT5G27580.1 15805477
AT5G49420.1 Bra007139.1-P AT5G27580.1 15805477
AT5G49420.1 Bra015129.1-P AT5G27580.1 15805477
AT5G49420.1 Bra018741.1-P AT5G27580.1 15805477
AT5G49420.1 Bra018767.1-P AT5G27580.1 15805477
AT5G49420.1 Bra020923.1-P AT5G27580.1 15805477
AT5G49420.1 Bra028019.1-P AT5G27580.1 15805477
AT5G49420.1 Bra028020.1-P AT5G27580.1 15805477
AT5G49420.1 Bra025607.1-P AT5G38740.1 15805477
AT5G49420.1 Bra025609.1-P AT5G38740.1 15805477
AT5G49420.1 Bra025619.1-P AT5G38740.1 15805477
AT5G49420.1 Bra025607.1-P AT5G40120.1 15805477
AT5G49420.1 Bra025609.1-P AT5G40120.1 15805477
AT5G49420.1 Bra025619.1-P AT5G40120.1 15805477
AT5G49420.1 Bra025607.1-P AT5G40220.1 15805477
AT5G49420.1 Bra025609.1-P AT5G40220.1 15805477
AT5G49420.1 Bra025619.1-P AT5G40220.1 15805477
AT5G49420.1 Bra031864.1-P AT5G65330.1 15805477
AT5G49490.1 Bra000214.1-P AT2G41090.1 17360592
AT5G49490.1 Bra000214.1-P AT2G41100.1 17360592
AT5G49490.1 Bra018296.1-P AT3G51920.1 17360592
AT5G49490.1 Bra033467.1-P AT3G51920.1 17360592
AT5G49490.1 Bra039723.1-P AT4G14640.1 17360592
AT5G49490.1 Bra002368.1-P AT5G21274.1 17360592
AT5G49490.1 Bra006595.1-P AT5G21274.1 17360592
AT5G49490.1 Bra004071.1-P AT5G27070.1 15805477
AT5G49490.1 Bra007138.1-P AT5G27070.1 15805477
AT5G49490.1 Bra007139.1-P AT5G27070.1 15805477
AT5G49490.1 Bra015129.1-P AT5G27070.1 15805477
AT5G49490.1 Bra018741.1-P AT5G27070.1 15805477
AT5G49490.1 Bra018767.1-P AT5G27070.1 15805477
AT5G49490.1 Bra020923.1-P AT5G27070.1 15805477
AT5G49490.1 Bra028019.1-P AT5G27070.1 15805477
AT5G49490.1 Bra028020.1-P AT5G27070.1 15805477
AT5G49490.1 Bra004071.1-P AT5G27090.1 15805477
AT5G49490.1 Bra007138.1-P AT5G27090.1 15805477
AT5G49490.1 Bra007139.1-P AT5G27090.1 15805477
AT5G49490.1 Bra015129.1-P AT5G27090.1 15805477
AT5G49490.1 Bra018741.1-P AT5G27090.1 15805477
AT5G49490.1 Bra018767.1-P AT5G27090.1 15805477
AT5G49490.1 Bra020923.1-P AT5G27090.1 15805477
AT5G49490.1 Bra028019.1-P AT5G27090.1 15805477
AT5G49490.1 Bra028020.1-P AT5G27090.1 15805477
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY01199 Canola nucleus 71.2 74.83
Bra033492.1-P Field mustard nucleus 70.55 74.4
Bra018727.1-P Field mustard nucleus 22.01 27.76
Bra014217.1-P Field mustard nucleus 23.95 26.71
Bra037434.1-P Field mustard nucleus 22.01 26.05
AT5G49490.1 Thale cress nucleus 22.33 24.21
AT5G49420.1 Thale cress nucleus 25.57 23.65
Bra040965.1-P Field mustard nucleus 14.89 23.23
AT5G38620.1 Thale cress nucleus 26.21 23.21
Bra010027.1-P Field mustard nucleus 25.24 22.61
Bra027116.1-P Field mustard nucleus 17.48 22.22
Bra009436.1-P Field mustard nucleus 19.42 19.61
Bra020600.1-P Field mustard nucleus 8.74 10.27
Protein Annotations
EnsemblPlants:Bra032767.1EnsemblPlants:Bra032767.1-PEnsemblPlantsGene:Bra032767ncoils:CoilSEG:segUniParc:UPI0002543A42
UniProt:M4EVD4MapMan:35.2::::
Description
AT5G38620 (E=4e-024) | MADS-box protein (AGL73)
Coordinates
chrA04:-:4738807..4743077
Molecular Weight (calculated)
34317.9 Da
IEP (calculated)
3.908
GRAVY (calculated)
-0.455
Length
309 amino acids
Sequence
(BLAST)
001: MVMDTEAETV DTKMVDTKVD TMMVEVVTRE EKTVVDTVKG NCWPLTPLAA SVKRTGIAVL ATPPSSNSNV SFFSFGHSSV DSIVTAFLTG ERPAVREEID
101: DHEDLGICLA RKELGLPQWW EDDALLKSKS PQELSLAINS MSRLLSKINE LRAQDAEAEA EPPLKKQKKK TEPTVEQTLV LRSGSSDKTL DYNNNNNDSL
201: EEIDFDQLID LDLDLDFDFE SMNSSDNNDE TMKMTEPLDQ PLLLPYDICA SPDNNNTYST GEMSLDYGID KQLQETTIAM SSVACDDGVS ALNEDDINFS
301: DFLTQFLQS
Best Arabidopsis Sequence Match ( AT5G38620.1 )
(BLAST)
001: MVKGTKRKIA IETIQKRDSL RVTCTKRRKG LYSKASQLCL LSDAQIAILA TPPSSESDVS FYSFGHSSVD AVVSAFLSGK RPVSAPKDNK ETREDVGICL
101: TRKNLGLGFW WNDESLVRSE NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC CIPENLNDIT QEPNQTLDIQ
201: SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV
301: DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV
Arabidopsis Description
MADS-box protein AGL73 [Source:UniProtKB/TrEMBL;Acc:Q9FFV9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.