Factsheet for Bra010027.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra004071.1-P
Bra006595.1-P
Bra007138.1-P
Bra007139.1-P
Bra015129.1-P
Bra018296.1-P
Bra018741.1-P
Bra018767.1-P
Bra020923.1-P
Bra025607.1-P
Bra025609.1-P
Bra025619.1-P
Bra028019.1-P
Bra028020.1-P
Bra031864.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38620.1	Bra031864.1-P	AT4G11250.1	15805477
AT5G38620.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra004071.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra007138.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra007139.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra015129.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra018741.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra018767.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra020923.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra028019.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra028020.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra025607.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025609.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025619.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025607.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra025609.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra025619.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G49420.1	Bra031864.1-P	AT4G11250.1	15805477
AT5G49420.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra004071.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra007138.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra007139.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra015129.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra018741.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra018767.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra020923.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra028019.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra028020.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G49490.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G49490.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G49490.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G49490.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G49490.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G49490.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G49490.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G49490.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra004071.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra007138.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra007139.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra015129.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra018741.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra018767.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra020923.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra028019.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra028020.1-P	AT5G27090.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86226	Canola	nucleus	76.81	89.53
Bra037434.1-P	Field mustard	nucleus	53.91	71.26
CDX85418	Canola	nucleus	51.3	67.56
Bra018727.1-P	Field mustard	nucleus	27.25	38.37
Bra014217.1-P	Field mustard	nucleus	28.12	35.02
Bra040965.1-P	Field mustard	nucleus	19.42	33.84
AT5G38620.1	Thale cress	nucleus	32.46	32.09
Bra033492.1-P	Field mustard	nucleus	26.38	31.06
AT5G49490.1	Thale cress	nucleus	24.93	30.18
AT5G49420.1	Thale cress	nucleus	26.96	27.84
Bra027116.1-P	Field mustard	nucleus	19.42	27.57
Bra032767.1-P	Field mustard	nucleus	22.61	25.24
Bra009436.1-P	Field mustard	nucleus	22.32	25.16
Bra020600.1-P	Field mustard	nucleus	13.33	17.49

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra010027	EnsemblPlants:Bra010027.1	EnsemblPlants:Bra010027.1-P	GO:GO:0000982
GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4D0M8	InterPro:MADS_SRF-like
PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000253EEC5	SEG:seg	:	:

Description

AT5G49490 (E=4e-036) AGL83 | AGL83 (AGAMOUS-LIKE 83); DNA binding / transcription factor

Coordinates

chrA06:+:18711189..18712226

Molecular Weight (calculated)

38294.7 Da

IEP (calculated)

4.092

GRAVY (calculated)

-0.410

Length

345 amino acids

Sequence
(BLAST)

001: MVKRVGGGGT KRKIDKMEKI PKREYRATTF SKRCSGLYSK AAQLCLLADA QIAILATPPS SQSNVSFFSF GHSTVDAVVK AYLTGRRLAP VREEPMEEDI
101: GVLMARKELG LELWWEKESL CESKDPRELM DAVKAMERML SKLRSGDFVS DEEDVTKSNE IMAKKSNVVL HQGTQEPDET LDIQAVCCVP GDDLPHEGFD
201: KITEEQDQIL ALCATDNNIN GLSGSGLDVY SQEVDIDELI DWTTFESSVF DDGVLDSTQE HQGSLLMNFE AAAHDVSTNP NPPMSVSEGV EEEALVFQNK
301: AANDVSTMNP DDLIYDFEGV VEEEGFVFQN SVLDEDNLQF SDYFN

Best Arabidopsis Sequence Match ( AT5G38620.1 )
(BLAST)

001: MVKGTKRKIA IETIQKRDSL RVTCTKRRKG LYSKASQLCL LSDAQIAILA TPPSSESDVS FYSFGHSSVD AVVSAFLSGK RPVSAPKDNK ETREDVGICL
101: TRKNLGLGFW WNDESLVRSE NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC CIPENLNDIT QEPNQTLDIQ
201: SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV
301: DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV

Arabidopsis Description

MADS-box protein AGL73 [Source:UniProtKB/TrEMBL;Acc:Q9FFV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.