Factsheet for Bra033492.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra004071.1-P
Bra006595.1-P
Bra007138.1-P
Bra007139.1-P
Bra015129.1-P
Bra018296.1-P
Bra018741.1-P
Bra018767.1-P
Bra020923.1-P
Bra025607.1-P
Bra025609.1-P
Bra025619.1-P
Bra028019.1-P
Bra028020.1-P
Bra031864.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38620.1	Bra031864.1-P	AT4G11250.1	15805477
AT5G38620.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra004071.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra007138.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra007139.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra015129.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra018741.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra018767.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra020923.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra028019.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra028020.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra025607.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025609.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025619.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025607.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra025609.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra025619.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G49420.1	Bra031864.1-P	AT4G11250.1	15805477
AT5G49420.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra004071.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra007138.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra007139.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra015129.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra018741.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra018767.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra020923.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra028019.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra028020.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G49490.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G49490.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G49490.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G49490.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G49490.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G49490.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G49490.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G49490.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra004071.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra007138.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra007139.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra015129.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra018741.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra018767.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra020923.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra028019.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra028020.1-P	AT5G27090.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01199	Canola	nucleus	94.88	94.56
Bra032767.1-P	Field mustard	nucleus	74.4	70.55
Bra018727.1-P	Field mustard	nucleus	27.65	33.06
Bra014217.1-P	Field mustard	nucleus	31.06	32.85
Bra037434.1-P	Field mustard	nucleus	28.33	31.8
AT5G49420.1	Thale cress	nucleus	34.47	30.24
AT5G49490.1	Thale cress	nucleus	27.65	28.42
AT5G38620.1	Thale cress	nucleus	32.76	27.51
Bra040965.1-P	Field mustard	nucleus	18.43	27.27
Bra010027.1-P	Field mustard	nucleus	31.06	26.38
Bra027116.1-P	Field mustard	nucleus	20.14	24.28
Bra009436.1-P	Field mustard	nucleus	24.57	23.53
Bra020600.1-P	Field mustard	nucleus	9.9	11.03

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra033492	EnsemblPlants:Bra033492.1	EnsemblPlants:Bra033492.1-P	GO:GO:0000982
GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4EXF5	InterPro:MADS_SRF-like
PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF277	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002544AA2	SEG:seg	:	:

Description

AT5G49420 (E=2e-041) | MADS-box protein (AGL84)

Coordinates

chrA01:-:11642248..11643129

Molecular Weight (calculated)

32773.9 Da

IEP (calculated)

4.047

GRAVY (calculated)

-0.575

Length

293 amino acids

Sequence
(BLAST)

001: MERITKRESA ATTFTKRSYG LHSKVSQLCL LTDAQIAVLA TPPSSHSNVS FFSFGHSSVD SIVTAFLTGE RPAVREEIDD HEAFGICLAR KELGLPQWWE
101: DDALLKSKSP QELSHAINSM SSLLTKINEL RAEDAEAEPP LKKQKKKNEE TMKKTEPTVE QTLLLPSDSS DKTLDYNNNN NDSLEEIDFD QLIDLDLDLD
201: FDFESMNSSD NNDETMKMTE PLDQPLLLPY DICASPDNNN TYSTGEMSLD YGIDKQLQET TIAMSSVACD DGVSALNEDD INFSDYLTQF LQS

Best Arabidopsis Sequence Match ( AT5G38620.1 )
(BLAST)

001: MVKGTKRKIA IETIQKRDSL RVTCTKRRKG LYSKASQLCL LSDAQIAILA TPPSSESDVS FYSFGHSSVD AVVSAFLSGK RPVSAPKDNK ETREDVGICL
101: TRKNLGLGFW WNDESLVRSE NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC CIPENLNDIT QEPNQTLDIQ
201: SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV
301: DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV

Arabidopsis Description

MADS-box protein AGL73 [Source:UniProtKB/TrEMBL;Acc:Q9FFV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.