Factsheet for Bra028020.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra000392.1-P
Bra002368.1-P
Bra004927.1-P
Bra006595.1-P
Bra009436.1-P
Bra010027.1-P
Bra011509.1-P
Bra014217.1-P
Bra017638.1-P
Bra018296.1-P
Bra018727.1-P
Bra032767.1-P
Bra033467.1-P
Bra033492.1-P
Bra037434.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27050.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G27050.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G27050.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G27050.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G27050.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G27070.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G27070.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G27070.1	Bra000392.1-P	AT2G45650.1	15805477
AT5G27070.1	Bra004927.1-P	AT2G45650.1	15805477
AT5G27070.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G27070.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G27070.1	Bra011509.1-P	AT3G57230.1	15805477
AT5G27070.1	Bra017638.1-P	AT3G57230.1	15805477
AT5G27070.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G27070.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra010027.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra010027.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra014217.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra018727.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra032767.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra033492.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra037434.1-P	AT5G49490.1	15805477
AT5G27580.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G27580.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra037434.1-P	AT5G49420.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93743	Canola	nucleus	97.34	97.34
CDX73409	Canola	nucleus	75.29	86.09
Bra007138.1-P	Field mustard	nucleus	84.03	78.65
Bra007139.1-P	Field mustard	nucleus	28.9	44.71
Bra028019.1-P	Field mustard	nucleus	47.91	44.21
Bra020923.1-P	Field mustard	nucleus	25.48	32.06
AT5G26865.1	Thale cress	nucleus	14.83	30.95
AT5G27050.1	Thale cress	nucleus	13.69	30.0
Bra018741.1-P	Field mustard	nucleus	29.66	29.55
Bra018767.1-P	Field mustard	nucleus	33.08	28.43
AT5G27580.1	Thale cress	nucleus	23.95	28.25
Bra015129.1-P	Field mustard	nucleus	33.84	27.9
AT5G27944.1	Thale cress	nucleus	23.57	27.68
AT5G27090.1	Thale cress	nucleus, plastid	17.49	24.6
AT5G26950.1	Thale cress	nucleus	26.24	23.88
AT5G27070.1	Thale cress	nucleus	24.71	22.65
Bra004071.1-P	Field mustard	nucleus	23.95	22.18
Bra025607.1-P	Field mustard	nucleus	20.91	15.76
Bra025609.1-P	Field mustard	nucleus	19.01	14.88
Bra022341.1-P	Field mustard	plastid	20.15	14.4
Bra037571.1-P	Field mustard	mitochondrion, nucleus, plastid	18.25	14.04
Bra025619.1-P	Field mustard	nucleus	19.39	13.9
Bra031864.1-P	Field mustard	nucleus	14.45	11.48

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra028020	EnsemblPlants:Bra028020.1	EnsemblPlants:Bra028020.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:M4EGV5	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF350	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025421EB	SEG:seg	:

Description

AT5G27580 (E=2e-018) AGL89 | AGL89; transcription factor

Coordinates

chrA09:+:19293834..19294708

Molecular Weight (calculated)

29760.6 Da

IEP (calculated)

6.159

GRAVY (calculated)

-0.699

Length

263 amino acids

Sequence
(BLAST)

001: MDSSSSTSSS RNKKVKLSVR KQTLFKKSSI NLLMRQETIL KKAGELSTLC GNEICVIHYD RVGNLVRTWP EDESQVQKLH DEKKRSPIEF SQKVQDLEGS
101: LVYKLQLLQD MMLREDHHAE PDQSITNLLR NGPTSTEQDL SRGDVYNSTA TGSLNHQSKY SIFMFNHENA TLSQLPHSSL EQSLIPSYYN NLNDSRTLLG
201: AQGFNDNNNL STTQGFFNFG YDNNALPEEQ VNFGYYNSLL GTQGFGGYDI NLNYTQGFNN LCT

Best Arabidopsis Sequence Match ( AT5G27090.2 )
(BLAST)

001: MDSSTSTKKN TKLFVRNQTC FKKSSLSSSN AKKTTNLSMR EQTMFKKALE LSTLCDIEVC VIYYGRDGKL IKTWPEDQSK ILHDKKLSEK VLEMEDSLES
101: GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE

Arabidopsis Description

AGL54AGAMOUS-like 54 [Source:UniProtKB/TrEMBL;Acc:Q9S9U2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.