Factsheet for Bra000392.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004007.1-P
Bra004071.1-P
Bra004361.1-P
Bra004928.1-P
Bra007138.1-P
Bra007139.1-P
Bra009436.1-P
Bra009911.1-P
Bra010623.1-P
Bra011509.1-P
Bra011797.1-P
Bra012564.1-P
Bra012997.1-P
Bra013364.1-P
Bra015129.1-P
Bra015643.1-P
Bra017638.1-P
Bra018741.1-P
Bra018767.1-P
Bra019221.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra020600.1-P
Bra020923.1-P
Bra028019.1-P
Bra028020.1-P
Bra029347.1-P
Bra029424.1-P
Bra030228.1-P
Bra031864.1-P
Bra035952.1-P
Bra038326.1-P
Bra038511.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45650.1	Bra009911.1-P	AT1G31630.1	15805477
AT2G45650.1	Bra020524.1-P	AT1G31630.1	15805477
AT2G45650.1	Bra020525.1-P	AT1G31630.1	15805477
AT2G45650.1	Bra020550.1-P	AT1G31630.1	15805477
AT2G45650.1	Bra020552.1-P	AT1G31630.1	15805477
AT2G45650.1	Bra009911.1-P	AT1G31640.1	15805477
AT2G45650.1	Bra020524.1-P	AT1G31640.1	15805477
AT2G45650.1	Bra020525.1-P	AT1G31640.1	15805477
AT2G45650.1	Bra020550.1-P	AT1G31640.1	15805477
AT2G45650.1	Bra020552.1-P	AT1G31640.1	15805477
AT2G45650.1	Bra009436.1-P	AT1G46408.1	15805477
AT2G45650.1	Bra020600.1-P	AT1G48150.1	15805477
AT2G45650.1	Bra004007.1-P	AT1G69120.1	15805477
AT2G45650.1	Bra004361.1-P	AT1G69120.1	15805477
AT2G45650.1	Bra038326.1-P	AT1G69120.1	15805477
AT2G45650.1	Bra015643.1-P	AT1G77980.1	15805477
AT2G45650.1	Bra030228.1-P	AT2G22540.1	15805477
AT2G45650.1	Bra038511.1-P	AT2G22540.1	15805477
AT2G45650.1	Bra000393.1-P	AT2G45660.1	15805477
AT2G45650.1	Bra004928.1-P	AT2G45660.1	15805477
AT2G45650.1	Bra039324.1-P	AT2G45660.1	15805477
AT2G45650.1	Bra011509.1-P	AT3G57230.1	15805477
AT2G45650.1	Bra017638.1-P	AT3G57230.1	15805477
AT2G45650.1	Bra029424.1-P	AT4G11880.1	15805477
AT2G45650.1	Bra012564.1-P	AT4G18960.1	9418042
AT2G45650.1	Bra013364.1-P	AT4G18960.1	9418042
AT2G45650.1	Bra019221.1-P	AT4G24540.1	15805477
AT2G45650.1	Bra010623.1-P	AT4G37940.1	15805477
AT2G45650.1	Bra011797.1-P	AT4G37940.1	15805477
AT2G45650.1	Bra004071.1-P	AT5G27070.1	15805477
AT2G45650.1	Bra007138.1-P	AT5G27070.1	15805477
AT2G45650.1	Bra007139.1-P	AT5G27070.1	15805477
AT2G45650.1	Bra015129.1-P	AT5G27070.1	15805477
AT2G45650.1	Bra018741.1-P	AT5G27070.1	15805477
AT2G45650.1	Bra018767.1-P	AT5G27070.1	15805477
AT2G45650.1	Bra020923.1-P	AT5G27070.1	15805477
AT2G45650.1	Bra028019.1-P	AT5G27070.1	15805477
AT2G45650.1	Bra028020.1-P	AT5G27070.1	15805477
AT2G45650.1	Bra020600.1-P	AT5G27130.1	15805477
AT2G45650.1	Bra012997.1-P	AT5G60910.1	15805477
AT2G45650.1	Bra029347.1-P	AT5G60910.1	15805477
AT2G45650.1	Bra035952.1-P	AT5G60910.1	15805477
AT2G45650.1	Bra031864.1-P	AT5G65330.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53885	Canola	nucleus	99.61	99.61
AT2G45650.1	Thale cress	nucleus	82.49	84.13
CDY60686	Canola	cytosol, nucleus, plastid	21.79	83.58
Bra004927.1-P	Field mustard	nucleus	75.88	80.58
VIT_15s0048g01270.t01	Wine grape	nucleus	62.65	65.98
KRH48304	Soybean	nucleus	60.31	63.27
KRH65193	Soybean	nucleus	59.92	62.86
GSMUA_Achr1P00750_001	Banana	nucleus	56.03	59.5
GSMUA_Achr4P30120_001	Banana	nucleus	53.31	58.3
Solyc01g093960.2.1	Tomato	nucleus	56.42	57.54
GSMUA_Achr2P10250_001	Banana	nucleus	53.7	57.02
PGSC0003DMT400000383	Potato	nucleus	56.03	56.47
KXG26975	Sorghum	nucleus	51.36	56.17
Os02t0682200-01	Rice	nucleus	53.31	54.8
EES07448	Sorghum	nucleus	52.14	52.55
Os04t0580700-01	Rice	nucleus	51.75	52.36
HORVU0Hr1G032300.1	Barley	nucleus	53.7	51.69
HORVU6Hr1G066140.9	Barley	nucleus	53.7	51.49
TraesCS6B01G286400.1	Wheat	nucleus	50.97	50.58
TraesCS6D01G240200.3	Wheat	nucleus	52.53	49.63
Bra014454.1-P	Field mustard	nucleus	43.58	48.7
TraesCS6A01G259000.2	Wheat	nucleus	52.14	46.21
Bra025411.1-P	Field mustard	nucleus	31.52	46.02
Zm00001d051465_P002	Maize	nucleus	52.14	45.73
Bra004361.1-P	Field mustard	nucleus	33.07	44.97
Bra021470.1-P	Field mustard	nucleus	43.97	44.84
Bra008674.1-P	Field mustard	nucleus	43.97	44.84
Bra039170.1-P	Field mustard	nucleus	43.58	44.8
Bra006322.1-P	Field mustard	nucleus	42.8	44.0
Bra032814.1-P	Field mustard	nucleus	42.8	43.48
Bra030032.1-P	Field mustard	nucleus	42.41	43.25
Bra010955.1-P	Field mustard	nucleus	40.86	43.03
Zm00001d017614_P003	Maize	nucleus	45.14	41.88
Bra029347.1-P	Field mustard	nucleus	38.91	41.67
Bra012997.1-P	Field mustard	nucleus	38.13	40.66
Bra035952.1-P	Field mustard	nucleus	37.74	40.25
Bra036201.1-P	Field mustard	nucleus	37.74	39.11
Bra025126.1-P	Field mustard	nucleus	37.35	37.35
Bra026543.1-P	Field mustard	nucleus	38.91	37.17
Bra011021.1-P	Field mustard	nucleus	36.58	37.01
Bra037895.1-P	Field mustard	nucleus	33.07	36.96
Bra038326.1-P	Field mustard	nucleus	36.58	36.72
Bra004716.1-P	Field mustard	nucleus	33.85	35.66
Bra000696.1-P	Field mustard	nucleus	31.91	35.5
Bra007419.1-P	Field mustard	nucleus	33.46	35.1
Bra039921.1-P	Field mustard	nucleus	30.74	34.8
Bra004007.1-P	Field mustard	nucleus	36.58	34.69
Bra013364.1-P	Field mustard	nucleus	33.85	34.52
Bra014552.1-P	Field mustard	nucleus	32.68	33.87
Bra012564.1-P	Field mustard	nucleus	33.07	33.86
Bra017376.1-P	Field mustard	nucleus	31.91	33.74
Bra030222.1-P	Field mustard	nucleus	29.18	33.04
Bra011797.1-P	Field mustard	nucleus	28.79	32.46
Bra010623.1-P	Field mustard	nucleus	26.46	31.78
Bra017638.1-P	Field mustard	nucleus	28.79	30.83
Bra003356.1-P	Field mustard	nucleus	31.52	29.67
Bra011509.1-P	Field mustard	nucleus	28.02	24.83
Bra040719.1-P	Field mustard	nucleus	12.45	18.82

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra000392	EnsemblPlants:Bra000392.1	EnsemblPlants:Bra000392.1-P	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4C864	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF146	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000253FE47	:	:	:	:

Description

AT2G45650 (E=3e-114) AGL6 | AGL6 (AGAMOUS-LIKE 6); DNA binding / transcription factor

Coordinates

chrA03:+:10894526..10896635

Molecular Weight (calculated)

29471.3 Da

IEP (calculated)

9.145

GRAVY (calculated)

-0.547

Length

257 amino acids

Sequence
(BLAST)

001: MGRGRVEMKL IENKINRQVT FSKRRNGLMK KAYELSVLCD AEVALIVFSS RGKLYEFGSV GVERTIERYH RCYNRSLSNS RPEESTQACN WCQEVTKLKS
101: HYESLVRTNR HLLGEDLGKM SLKELLGLER QLEAALTTTR KRKTQVMIEE MEDLRKKASY IIERQLGDIN KQLKIKFDQA EGLAFKSFQY LWPNTAASVA
201: GDPSNSEFPV QSSSVDCNTE PFLQIGFQQH YYVQGEGSSV SKSNIACKTN FVQDWVL

Best Arabidopsis Sequence Match ( AT2G45650.1 )
(BLAST)

001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL

Arabidopsis Description

AGL6AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.