Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000392.1-P
Bra004927.1-P
Bra009436.1-P
Bra010623.1-P
Bra010955.1-P
Bra011509.1-P
Bra011797.1-P
Bra012564.1-P
Bra012997.1-P
Bra013364.1-P
Bra014454.1-P
Bra017638.1-P
Bra019221.1-P
Bra020600.1-P
Bra021470.1-P
Bra029347.1-P
Bra029424.1-P
Bra030032.1-P
Bra032814.1-P
Bra035952.1-P
Bra039170.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G18960.1 Bra010955.1-P AT1G24260.2 9418042
AT4G18960.1 Bra030032.1-P AT1G24260.2 9418042
AT4G18960.1 Bra032814.1-P AT1G24260.2 9418042
AT4G18960.1 Bra009436.1-P AT1G46408.1 15805477
AT4G18960.1 Bra020600.1-P AT1G48150.1 15805477
AT4G18960.1 Bra000392.1-P AT2G45650.1 9418042
AT4G18960.1 Bra004927.1-P AT2G45650.1 9418042
AT4G18960.1 Bra021470.1-P AT3G02310.1 15604664
AT4G18960.1 Bra039170.1-P AT3G02310.1 15604664
AT4G18960.1 Bra021470.1-P AT3G02310.1 15805477
AT4G18960.1 Bra039170.1-P AT3G02310.1 15805477
AT4G18960.1 Bra021470.1-P AT3G02310.1 9418042
AT4G18960.1 Bra039170.1-P AT3G02310.1 9418042
AT4G18960.1 Bra011509.1-P AT3G57230.1 15805477
AT4G18960.1 Bra017638.1-P AT3G57230.1 15805477
AT4G18960.1 Bra014454.1-P AT3G61120.1 15805477
AT4G18960.1 Bra029424.1-P AT4G11880.1 15805477
AT4G18960.1 Bra012564.1-P AT4G18960.1 14555696
AT4G18960.1 Bra013364.1-P AT4G18960.1 14555696
AT4G18960.1 Bra019221.1-P AT4G24540.1 15805477
AT4G18960.1 Bra010623.1-P AT4G37940.1 15805477
AT4G18960.1 Bra011797.1-P AT4G37940.1 15805477
AT4G18960.1 Bra020600.1-P AT5G27130.1 15805477
AT4G18960.1 Bra012997.1-P AT5G60910.1 15805477
AT4G18960.1 Bra029347.1-P AT5G60910.1 15805477
AT4G18960.1 Bra035952.1-P AT5G60910.1 15805477
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78909 Canola nucleus 100.0 100.0
AT4G18960.1 Thale cress nucleus 94.44 94.44
Bra012564.1-P Field mustard nucleus 93.65 94.02
CDX99406 Canola nucleus 99.6 80.45
VIT_10s0003g02070.t01 Wine grape nucleus 69.05 76.99
KRH21150 Soybean nucleus 69.44 72.02
PGSC0003DMT400073134 Potato nucleus 68.25 69.35
Solyc02g071730.2.1 Tomato nucleus 68.25 69.35
GSMUA_Achr10P... Banana nucleus 59.52 65.5
KRH42930 Soybean nucleus 63.1 65.43
KRH59043 Soybean nucleus 62.3 64.61
GSMUA_Achr5P06590_001 Banana nucleus 44.44 64.0
Bra037895.1-P Field mustard nucleus 55.95 61.3
Bra000696.1-P Field mustard nucleus 54.76 59.74
GSMUA_Achr6P14760_001 Banana nucleus 59.92 59.45
Bra014552.1-P Field mustard nucleus 58.33 59.27
Bra004716.1-P Field mustard nucleus 57.14 59.02
Bra007419.1-P Field mustard nucleus 57.14 58.78
EES00105 Sorghum nucleus 60.71 56.88
Zm00001d039434_P001 Maize nucleus 59.13 56.87
TraesCS3D01G140200.2 Wheat nucleus 61.51 56.57
TraesCS1B01G144800.1 Wheat nucleus 59.52 55.76
HORVU3Hr1G026650.1 Barley nucleus 59.92 55.72
TraesCS1D01G127700.1 Wheat nucleus 59.13 55.39
TraesCS1A01G125800.1 Wheat nucleus 58.73 55.02
TraesCS3A01G314300.1 Wheat nucleus 59.52 54.95
TraesCS1D01G262700.1 Wheat nucleus 53.57 54.0
Os01t0201700-02 Rice nucleus 59.13 53.99
Os05t0203800-02 Rice nucleus 57.94 53.68
Zm00001d042591_P002 Maize nucleus 56.35 52.99
TraesCS1B01G273300.1 Wheat nucleus 53.57 52.94
EES01878 Sorghum nucleus 57.54 52.35
Os01t0886200-01 Rice nucleus 54.76 52.08
HORVU1Hr1G023620.1 Barley nucleus 51.59 51.59
TraesCS5B01G115100.1 Wheat nucleus 50.79 50.79
TraesCS5D01G118200.1 Wheat nucleus 50.79 50.79
TraesCS5A01G117500.1 Wheat nucleus 50.4 50.0
Bra003356.1-P Field mustard nucleus 53.97 49.82
TraesCS3B01G157500.4 Wheat nucleus 60.71 49.35
OQU77603 Sorghum nucleus 57.14 49.32
Os12t0207000-01 Rice nucleus 52.78 49.26
GSMUA_Achr10P... Banana nucleus 62.3 49.22
TraesCS1A01G262700.1 Wheat endoplasmic reticulum 53.57 49.09
Zm00001d023955_P003 Maize nucleus 50.79 48.3
EES15827 Sorghum nucleus 50.4 47.21
Zm00001d037737_P001 Maize nucleus 56.35 46.41
HORVU1Hr1G029220.1 Barley nucleus 59.13 45.71
Zm00001d041781_P001 Maize nucleus 51.19 44.95
Zm00001d008882_P001 Maize nucleus 55.56 42.55
Bra025411.1-P Field mustard nucleus 29.37 42.05
Bra004361.1-P Field mustard nucleus 28.57 38.1
Bra010955.1-P Field mustard nucleus 35.71 36.89
Bra008674.1-P Field mustard nucleus 36.11 36.11
Bra030222.1-P Field mustard nucleus 32.14 35.68
Bra030032.1-P Field mustard nucleus 35.32 35.32
Bra039170.1-P Field mustard nucleus 34.92 35.2
Bra032814.1-P Field mustard nucleus 35.32 35.18
Bra010623.1-P Field mustard nucleus 29.76 35.05
Bra029347.1-P Field mustard nucleus 33.33 35.0
Bra021470.1-P Field mustard nucleus 34.92 34.92
Bra006322.1-P Field mustard nucleus 34.52 34.8
Bra004927.1-P Field mustard nucleus 33.33 34.71
Bra011797.1-P Field mustard nucleus 31.35 34.65
Bra035952.1-P Field mustard nucleus 32.94 34.44
Bra039921.1-P Field mustard nucleus 30.95 34.36
Bra014454.1-P Field mustard nucleus 31.35 34.35
Bra017638.1-P Field mustard nucleus 32.54 34.17
Bra012997.1-P Field mustard nucleus 32.54 34.02
Bra000392.1-P Field mustard nucleus 34.52 33.85
Bra025126.1-P Field mustard nucleus 34.52 33.85
Bra026543.1-P Field mustard nucleus 35.32 33.09
Bra011021.1-P Field mustard nucleus 32.14 31.89
Bra038326.1-P Field mustard nucleus 32.14 31.64
Bra036201.1-P Field mustard nucleus 30.16 30.65
Bra017376.1-P Field mustard nucleus 29.37 30.45
Bra004007.1-P Field mustard nucleus 30.95 28.78
Bra011509.1-P Field mustard nucleus 29.76 25.86
Bra040719.1-P Field mustard nucleus 16.27 24.12
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10EnsemblPlantsGene:Bra013364EnsemblPlants:Bra013364.1EnsemblPlants:Bra013364.1-Pncoils:Coil
GO:GO:0000977GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0045944GO:GO:0046983InterPro:IPR002100InterPro:IPR002487InterPro:IPR036879UniProt:M4DA54
InterPro:MADS_MEF2-likePFAM:PF00319PFAM:PF01486PRINTS:PR00404ScanProsite:PS00350PFscan:PS50066
PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF187SMART:SM00432SUPFAM:SSF55455InterPro:TF_Kbox
InterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI000012570ESEG:seg::
Description
AT4G18960 (E=1e-118) AG | AG (AGAMOUS); DNA binding / transcription factor
Coordinates
chrA01:+:5212224..5216213
Molecular Weight (calculated)
28780.1 Da
IEP (calculated)
9.809
GRAVY (calculated)
-0.854
Length
252 amino acids
Sequence
(BLAST)
001: MAYQMELGGE SSPQRKAGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLDRS VNRIRSKKNE LLFAEIDYMQ KREVDLHNDN QLLRAKIAEN ERNNPSMSLM
201: PGGSNYEQIM PPPQTQPQPF DSRNYFQVAA LQPNNHHYSS AGREDQTALQ LV
Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)
001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
Arabidopsis Description
AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.