Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G314300.1 | Wheat | nucleus | 97.08 | 97.44 |
| HORVU3Hr1G026650.1 | Barley | nucleus | 96.35 | 97.42 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 95.62 | 84.52 |
| Os01t0201700-02 | Rice | nucleus | 79.93 | 79.35 |
| EES00105 | Sorghum | nucleus | 75.91 | 77.32 |
| Zm00001d039434_P001 | Maize | nucleus | 72.26 | 75.57 |
| GSMUA_Achr10P... | Banana | nucleus | 59.49 | 71.18 |
| KRH14461 | Soybean | nucleus | 26.28 | 69.23 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 56.93 | 69.03 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 64.23 | 65.43 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 58.76 | 63.39 |
| PGSC0003DMT400073134 | Potato | nucleus | 57.3 | 63.31 |
| Solyc02g071730.2.1 | Tomato | nucleus | 56.93 | 62.9 |
| CDY09267 | Canola | nucleus | 56.93 | 62.65 |
| KRH21150 | Soybean | nucleus | 54.74 | 61.73 |
| AT4G18960.1 | Thale cress | nucleus | 56.57 | 61.51 |
| Bra013364.1-P | Field mustard | nucleus | 56.57 | 61.51 |
| CDX78909 | Canola | nucleus | 56.57 | 61.51 |
| CDX98597 | Canola | nucleus | 56.2 | 61.35 |
| Bra012564.1-P | Field mustard | nucleus | 56.2 | 61.35 |
| KRH42930 | Soybean | nucleus | 52.55 | 59.26 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 54.38 | 59.13 |
| KRH59043 | Soybean | nucleus | 51.09 | 57.61 |
| KRH46066 | Soybean | nucleus | 51.82 | 57.49 |
| KRG98899 | Soybean | nucleus | 51.46 | 57.32 |
| CDX79857 | Canola | nucleus | 49.63 | 55.74 |
| Bra004716.1-P | Field mustard | nucleus | 49.63 | 55.74 |
| KRH73684 | Soybean | nucleus | 50.0 | 55.69 |
| CDX98330 | Canola | nucleus | 50.0 | 55.24 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 50.0 | 54.8 |
| Bra007419.1-P | Field mustard | nucleus | 48.91 | 54.69 |
| Bra014552.1-P | Field mustard | nucleus | 49.27 | 54.44 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 54.38 | 54.38 |
| AT2G42830.2 | Thale cress | nucleus | 48.54 | 53.63 |
| Solyc07g055920.2.1 | Tomato | nucleus | 52.19 | 53.56 |
| PGSC0003DMT400044552 | Potato | nucleus | 49.63 | 53.54 |
| Zm00001d008882_P001 | Maize | nucleus | 63.5 | 52.89 |
| GSMUA_Achr10P... | Banana | nucleus | 61.31 | 52.66 |
| TraesCS7D01G107200.1 | Wheat | nucleus | 17.88 | 50.52 |
| CDX99406 | Canola | nucleus | 56.93 | 50.0 |
| CDY49254 | Canola | nucleus | 49.63 | 49.45 |
| CDX89005 | Canola | nucleus | 48.91 | 48.55 |
| AT3G58780.4 | Thale cress | nucleus | 49.63 | 48.4 |
| CDY00589 | Canola | nucleus | 48.54 | 48.36 |
| Bra003356.1-P | Field mustard | nucleus | 45.62 | 45.79 |
| CDX67765 | Canola | nucleus | 50.37 | 39.66 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 29.93 | 36.12 |
| TraesCS6D01G273500.2 | Wheat | nucleus | 31.75 | 36.1 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 29.2 | 35.24 |
| TraesCS7D01G106900.1 | Wheat | nucleus | 29.56 | 35.22 |
| TraesCS7D01G106600.1 | Wheat | nucleus | 29.2 | 34.78 |
| TraesCS4D01G243700.1 | Wheat | nucleus | 28.47 | 34.67 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 30.29 | 34.44 |
| TraesCS2D01G325000.1 | Wheat | nucleus | 29.93 | 34.17 |
| TraesCS1D01G045700.1 | Wheat | nucleus | 29.2 | 33.9 |
| TraesCS1D01G045600.1 | Wheat | nucleus | 28.83 | 33.76 |
| TraesCS1D01G045500.1 | Wheat | nucleus | 29.93 | 33.74 |
| TraesCS5D01G294500.1 | Wheat | nucleus | 31.02 | 33.73 |
| TraesCS5D01G002200.2 | Wheat | nucleus | 28.47 | 33.48 |
| TraesCS5D01G401700.1 | Wheat | nucleus | 28.83 | 33.47 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 33.21 | 33.46 |
| TraesCS7D01G261600.1 | Wheat | nucleus | 29.56 | 32.66 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 28.83 | 31.85 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 30.66 | 31.0 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 28.47 | 30.71 |
| TraesCS5D01G002100.1 | Wheat | nucleus | 24.82 | 30.22 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 28.83 | 29.59 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF187 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS3D01G140200 | EnsemblPlants:TraesCS3D01G140200.2 | TIGR:cd00265 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:100853128..100860426
Molecular Weight (calculated)
31119.8 Da
IEP (calculated)
9.198
GRAVY (calculated)
-0.747
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSMMADLSC GASGVTVNDH QLAAPAPEDS AVAGSEKMGR GRIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV ALIVFSSRGR LYEYSNNSVK
101: ATIERYKKAN SDTSNSGTVA EVNAQYYQQE SSKLRQQISS LQNSNSRSLV RDSVSTMTLR DLKQLEGRLE KGIAKIRARK NELMYAEVEY MQKREMELHN
201: DNIYLRSKVS ENERGQQPMN MMASGSTSSE YDHMVPPFDS RNFLQANILQ QQQQQHYSQQ LQPTALQLGQ QYFN
101: ATIERYKKAN SDTSNSGTVA EVNAQYYQQE SSKLRQQISS LQNSNSRSLV RDSVSTMTLR DLKQLEGRLE KGIAKIRARK NELMYAEVEY MQKREMELHN
201: DNIYLRSKVS ENERGQQPMN MMASGSTSSE YDHMVPPFDS RNFLQANILQ QQQQQHYSQQ LQPTALQLGQ QYFN
001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
Arabidopsis Description
AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.