Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G286800.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS5B01G286100.2 | Wheat | nucleus | 98.81 | 98.81 |
| HORVU5Hr1G076400.1 | Barley | nucleus | 98.81 | 98.81 |
| Os09t0507200-01 | Rice | nucleus | 87.7 | 89.11 |
| EER97012 | Sorghum | nucleus | 84.52 | 87.65 |
| Zm00001d006094_P001 | Maize | nucleus | 84.92 | 85.26 |
| Zm00001d021057_P001 | Maize | nucleus | 79.76 | 81.38 |
| TraesCS7D01G261600.1 | Wheat | nucleus | 75.79 | 77.02 |
| GSMUA_Achr11P... | Banana | nucleus | 68.65 | 73.62 |
| KRG93698 | Soybean | nucleus | 63.89 | 64.66 |
| KRH18339 | Soybean | nucleus | 63.89 | 64.66 |
| VIT_14s0083g01050.t01 | Wine grape | nucleus | 61.9 | 64.2 |
| KRH45097 | Soybean | nucleus | 63.89 | 64.14 |
| KRH01380 | Soybean | nucleus | 63.89 | 63.14 |
| Solyc02g089200.2.1 | Tomato | nucleus | 59.92 | 61.38 |
| Bra008674.1-P | Field mustard | nucleus | 59.92 | 59.92 |
| Bra006322.1-P | Field mustard | nucleus | 59.13 | 59.6 |
| CDY26462 | Canola | nucleus | 59.52 | 59.06 |
| CDY57524 | Canola | nucleus | 58.33 | 58.8 |
| Bra039170.1-P | Field mustard | nucleus | 58.33 | 58.8 |
| CDY43239 | Canola | nucleus | 57.94 | 58.4 |
| CDY34718 | Canola | nucleus | 57.94 | 57.94 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 51.98 | 57.71 |
| Bra021470.1-P | Field mustard | nucleus | 57.54 | 57.54 |
| CDX70651 | Canola | nucleus | 59.13 | 57.53 |
| CDX78653 | Canola | nucleus | 59.13 | 57.53 |
| AT3G02310.1 | Thale cress | nucleus | 56.75 | 57.2 |
| CDX69499 | Canola | nucleus | 59.92 | 57.2 |
| AT5G15800.2 | Thale cress | nucleus | 59.13 | 56.87 |
| TraesCS4D01G243700.1 | Wheat | nucleus | 46.43 | 52.0 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 46.03 | 51.1 |
| PGSC0003DMT400004875 | Potato | nucleus | 37.3 | 50.0 |
| TraesCS5D01G401700.1 | Wheat | nucleus | 46.43 | 49.58 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 46.43 | 47.18 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 44.44 | 46.47 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 50.0 | 46.32 |
| TraesCS7D01G107200.1 | Wheat | nucleus | 17.46 | 45.36 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 41.67 | 41.34 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 42.86 | 39.85 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 40.87 | 38.58 |
| TraesCS7D01G106900.1 | Wheat | nucleus | 31.35 | 34.35 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 33.33 | 33.6 |
| TraesCS7D01G106600.1 | Wheat | nucleus | 30.56 | 33.48 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 35.32 | 33.09 |
| TraesCS5D01G002200.2 | Wheat | nucleus | 30.56 | 33.05 |
| TraesCS1D01G045700.1 | Wheat | nucleus | 30.56 | 32.63 |
| TraesCS2D01G325000.1 | Wheat | nucleus | 30.95 | 32.5 |
| TraesCS1D01G045600.1 | Wheat | nucleus | 30.16 | 32.48 |
| TraesCS1D01G045500.1 | Wheat | nucleus | 30.95 | 32.1 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 31.75 | 31.75 |
| TraesCS6D01G273500.2 | Wheat | nucleus | 30.16 | 31.54 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 33.73 | 31.02 |
| TraesCS5D01G002100.1 | Wheat | nucleus | 26.19 | 29.33 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF260 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS5D01G294500 | EnsemblPlants:TraesCS5D01G294500.1 | TIGR:cd00265 |
Description
No Description!
Coordinates
chr5D:+:391730414..391736900
Molecular Weight (calculated)
29043.8 Da
IEP (calculated)
8.995
GRAVY (calculated)
-0.809
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG QSMPKTLERY QKCSYGGPDT AIQNKENELV QSSRNEYLKL
101: KARVENLQRT QRNLLGEDLG SLGIKDLEQL EKQLDSSLRH IRSTRTQHML DQLTDLQRKE QMLCEANKCL RRKLEESSQQ MQGQMWEQHA ANLLGYDQLR
201: QSPHQQQAPH HGGNGFFHPL DPTTEPTLQI GYTQEQINNA CVAASFMPTW LP
101: KARVENLQRT QRNLLGEDLG SLGIKDLEQL EKQLDSSLRH IRSTRTQHML DQLTDLQRKE QMLCEANKCL RRKLEESSQQ MQGQMWEQHA ANLLGYDQLR
201: QSPHQQQAPH HGGNGFFHPL DPTTEPTLQI GYTQEQINNA CVAASFMPTW LP
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAV ELSSQQEYLK
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.