Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006322.1-P | Field mustard | nucleus | 90.84 | 95.2 |
| Bra008674.1-P | Field mustard | nucleus | 90.08 | 93.65 |
| CDY26462 | Canola | nucleus | 90.46 | 93.31 |
| CDX78653 | Canola | nucleus | 91.6 | 92.66 |
| CDX70651 | Canola | nucleus | 91.22 | 92.28 |
| CDX69499 | Canola | nucleus | 90.84 | 90.15 |
| AT3G02310.1 | Thale cress | nucleus | 83.21 | 87.2 |
| VIT_14s0083g01050.t01 | Wine grape | nucleus | 71.76 | 77.37 |
| KRH45097 | Soybean | nucleus | 73.66 | 76.89 |
| KRH18339 | Soybean | nucleus | 72.52 | 76.31 |
| KRG93698 | Soybean | nucleus | 72.14 | 75.9 |
| KRH01380 | Soybean | nucleus | 73.28 | 75.29 |
| Solyc02g089200.2.1 | Tomato | nucleus | 62.21 | 66.26 |
| PGSC0003DMT400003483 | Potato | nucleus | 62.21 | 66.26 |
| GSMUA_Achr11P... | Banana | nucleus | 55.34 | 61.7 |
| AT1G24260.2 | Thale cress | nucleus | 58.4 | 60.96 |
| EER97012 | Sorghum | nucleus | 55.34 | 59.67 |
| TraesCS5B01G286100.2 | Wheat | nucleus | 57.25 | 59.52 |
| HORVU5Hr1G076400.1 | Barley | nucleus | 57.25 | 59.52 |
| TraesCS5A01G286800.1 | Wheat | nucleus | 56.87 | 59.13 |
| TraesCS5D01G294500.1 | Wheat | nucleus | 56.87 | 59.13 |
| Os09t0507200-01 | Rice | nucleus | 55.73 | 58.87 |
| Zm00001d006094_P001 | Maize | nucleus | 55.73 | 58.17 |
| Os08t0531700-01 | Rice | nucleus | 54.58 | 57.43 |
| TraesCS7B01G158600.1 | Wheat | nucleus | 53.82 | 57.32 |
| EES15309 | Sorghum | nucleus | 52.67 | 57.26 |
| TraesCS7A01G260600.1 | Wheat | nucleus | 53.82 | 56.85 |
| TraesCS7D01G261600.1 | Wheat | nucleus | 53.82 | 56.85 |
| Zm00001d021057_P001 | Maize | nucleus | 53.44 | 56.68 |
| AT2G03710.1 | Thale cress | nucleus | 54.2 | 55.04 |
| Zm00001d031620_P001 | Maize | nucleus | 53.05 | 54.51 |
| HORVU7Hr1G054220.3 | Barley | nucleus | 51.91 | 53.12 |
| AT2G45650.1 | Thale cress | nucleus | 43.89 | 45.63 |
| AT3G61120.1 | Thale cress | nucleus | 40.46 | 43.44 |
| AT5G60910.1 | Thale cress | nucleus | 37.4 | 40.5 |
| AT1G26310.1 | Thale cress | nucleus | 37.02 | 38.04 |
| AT1G69120.1 | Thale cress | nucleus | 37.02 | 37.89 |
| AT2G42830.2 | Thale cress | nucleus | 35.11 | 37.1 |
| AT3G30260.1 | Thale cress | nucleus | 34.35 | 36.14 |
| AT4G18960.1 | Thale cress | nucleus | 33.21 | 34.52 |
| AT2G14210.2 | Thale cress | nucleus | 30.92 | 34.47 |
| AT4G37940.1 | Thale cress | nucleus | 29.01 | 33.33 |
| AT3G57230.1 | Thale cress | nucleus | 29.77 | 32.5 |
| AT3G58780.4 | Thale cress | nucleus | 34.35 | 32.03 |
| AT2G22630.2 | Thale cress | nucleus | 27.48 | 31.72 |
| AT4G09960.4 | Thale cress | nucleus | 32.82 | 26.14 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:831436 | ProteinID:AED92208.1 | ArrayExpress:AT5G15800 | EnsemblPlantsGene:AT5G15800 |
| RefSeq:AT5G15800 | TAIR:AT5G15800 | RefSeq:AT5G15800-TAIR-G | EnsemblPlants:AT5G15800.2 | TAIR:AT5G15800.2 | Unigene:At.10163 |
| ncoils:Coil | UniProt:F4KB90 | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048481 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | RefSeq:NP_001119230.1 | PFAM:PF00319 | PFAM:PF01486 | PO:PO:0000037 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF353 | Symbol:SEP1 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000016DB10 | SEG:seg |
Description
SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
Coordinates
chr5:-:5151334..5154253
Molecular Weight (calculated)
29915.6 Da
IEP (calculated)
6.894
GRAVY (calculated)
-0.784
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GCCFGDDDDD DRYDNPVCSE QITATTQAQA QQGNGYIPGW ML
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GCCFGDDDDD DRYDNPVCSE QITATTQAQA QQGNGYIPGW ML
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.