Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18911 | Canola | nucleus | 83.73 | 89.03 |
| CDY18912 | Canola | nucleus | 82.14 | 85.89 |
| Bra004927.1-P | Field mustard | nucleus | 81.75 | 85.12 |
| CDX74754 | Canola | nucleus | 86.11 | 84.77 |
| CDY53885 | Canola | nucleus | 84.52 | 82.88 |
| Bra000392.1-P | Field mustard | nucleus | 84.13 | 82.49 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 21.43 | 80.6 |
| VIT_15s0048g01270.t01 | Wine grape | nucleus | 68.65 | 70.9 |
| KRH48304 | Soybean | nucleus | 64.29 | 66.12 |
| KRH65193 | Soybean | nucleus | 63.89 | 65.71 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 59.13 | 63.4 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 60.32 | 62.81 |
| Solyc01g093960.2.1 | Tomato | nucleus | 62.7 | 62.7 |
| PGSC0003DMT400000383 | Potato | nucleus | 62.3 | 61.57 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 58.73 | 61.16 |
| Os02t0682200-01 | Rice | nucleus | 60.32 | 60.8 |
| EES07448 | Sorghum | nucleus | 58.73 | 58.04 |
| Os04t0580700-01 | Rice | nucleus | 57.54 | 57.09 |
| HORVU0Hr1G032300.1 | Barley | nucleus | 60.32 | 56.93 |
| HORVU6Hr1G066140.9 | Barley | nucleus | 60.32 | 56.72 |
| KXG26975 | Sorghum | nucleus | 52.38 | 56.17 |
| AT3G61120.1 | Thale cress | nucleus | 52.78 | 54.51 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 55.95 | 54.44 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 57.94 | 53.68 |
| TraesCS6A01G259000.2 | Wheat | nucleus | 57.54 | 50.0 |
| Zm00001d051465_P002 | Maize | nucleus | 57.94 | 49.83 |
| AT3G02310.1 | Thale cress | nucleus | 46.83 | 47.2 |
| AT1G24260.2 | Thale cress | nucleus | 46.43 | 46.61 |
| Zm00001d017614_P003 | Maize | nucleus | 50.4 | 45.85 |
| AT5G15800.2 | Thale cress | nucleus | 45.63 | 43.89 |
| AT5G60910.1 | Thale cress | nucleus | 40.08 | 41.74 |
| AT2G03710.1 | Thale cress | nucleus | 41.67 | 40.7 |
| AT1G69120.1 | Thale cress | nucleus | 38.89 | 38.28 |
| AT1G26310.1 | Thale cress | nucleus | 38.49 | 38.04 |
| AT3G30260.1 | Thale cress | nucleus | 37.3 | 37.75 |
| AT2G42830.2 | Thale cress | nucleus | 36.11 | 36.69 |
| AT4G18960.1 | Thale cress | nucleus | 36.51 | 36.51 |
| AT2G22630.2 | Thale cress | nucleus | 31.35 | 34.8 |
| AT4G37940.1 | Thale cress | nucleus | 30.95 | 34.21 |
| AT2G14210.2 | Thale cress | nucleus | 31.35 | 33.62 |
| AT3G57230.1 | Thale cress | nucleus | 31.35 | 32.92 |
| AT3G58780.4 | Thale cress | nucleus | 35.32 | 31.67 |
| AT4G09960.4 | Thale cress | nucleus | 36.51 | 27.96 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:819173 | ProteinID:AAC06173.1 | ProteinID:AEC10582.1 | ProteinID:AFP23735.1 |
| ProteinID:AFP23736.1 | ProteinID:AFP23742.1 | ProteinID:AFP23743.1 | ProteinID:AFP23745.1 | ProteinID:AFP23746.1 | ProteinID:AFP23747.1 |
| ProteinID:AFP23749.1 | ProteinID:AFP23754.1 | ProteinID:AFP23756.1 | ProteinID:AFP23759.1 | ProteinID:AFP23760.1 | ProteinID:AFP23761.1 |
| ProteinID:AFP23762.1 | ProteinID:AFP23763.1 | ProteinID:AFP23764.1 | ProteinID:AFP23765.1 | ProteinID:AFP23766.1 | ProteinID:AFP23769.1 |
| ProteinID:AFP23770.1 | ProteinID:AFP23771.1 | ProteinID:AFP23773.1 | ProteinID:AFP23774.1 | ProteinID:AFP23775.1 | ProteinID:AFP23776.1 |
| ProteinID:AFP23777.1 | ProteinID:AFP23778.1 | ProteinID:AFP23779.1 | ProteinID:AFP23780.1 | ProteinID:AFP23784.1 | ProteinID:AFP23785.1 |
| ProteinID:AFP23786.1 | ProteinID:AFP23788.1 | ProteinID:AFP23789.1 | ProteinID:AFP23790.1 | ProteinID:AFP23791.1 | ProteinID:AFP23793.1 |
| ProteinID:AFP23796.1 | ProteinID:AFP23797.1 | ProteinID:AFP23798.1 | ProteinID:AFP23799.1 | ProteinID:AFP23800.1 | ProteinID:AFP23801.1 |
| ProteinID:AFP23802.1 | ProteinID:AFP23804.1 | ProteinID:AFP23806.1 | ProteinID:AFP23809.1 | ProteinID:AFP23811.1 | ProteinID:AFP23812.1 |
| ProteinID:AFP23813.1 | ProteinID:AFP23814.1 | ProteinID:AFP23815.1 | ProteinID:AFP23816.1 | ProteinID:AFP23817.1 | ProteinID:AFP23819.1 |
| ProteinID:AFP23821.1 | ProteinID:AFP23822.1 | ProteinID:AFP23823.1 | ProteinID:AFP23824.1 | ProteinID:AFP23825.1 | ProteinID:AFP23826.1 |
| ProteinID:AFP23828.1 | ProteinID:AFP23833.1 | ProteinID:AFP23834.1 | ProteinID:AFP23835.1 | ProteinID:AFP23836.1 | ProteinID:AFP23837.1 |
| ProteinID:AFP23839.1 | ProteinID:AFP23841.1 | Symbol:AGL6 | ArrayExpress:AT2G45650 | EnsemblPlantsGene:AT2G45650 | RefSeq:AT2G45650 |
| TAIR:AT2G45650 | RefSeq:AT2G45650-TAIR-G | EnsemblPlants:AT2G45650.1 | TAIR:AT2G45650.1 | ncoils:Coil | EMBL:DQ446624 |
| GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009911 | GO:GO:0009987 | GO:GO:0010228 |
| GO:GO:0030154 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048437 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | EMBL:M55554 | InterPro:MADS_MEF2-like | RefSeq:NP_182089.1 | UniProt:P29386 | PFAM:PF00319 |
| PFAM:PF01486 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0020003 |
| PO:PO:0025022 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF146 | UniProt:Q1PEU3 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI00001256C9 | SEG:seg | : | : | : |
Description
AGL6AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]
Coordinates
chr2:+:18804190..18806586
Molecular Weight (calculated)
28746.1 Da
IEP (calculated)
7.853
GRAVY (calculated)
-0.653
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.