Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64836 | Soybean | nucleus | 17.02 | 93.33 |
| Bra037895.1-P | Field mustard | nucleus | 63.83 | 91.3 |
| CDX90741 | Canola | nucleus | 61.7 | 87.88 |
| Bra000696.1-P | Field mustard | nucleus | 61.7 | 87.88 |
| KRH56460 | Soybean | nucleus | 52.58 | 77.93 |
| VIT_18s0041g01880.t01 | Wine grape | nucleus | 52.58 | 77.58 |
| KRH64830 | Soybean | nucleus | 34.35 | 70.19 |
| CDY60297 | Canola | nucleus | 62.01 | 69.86 |
| GSMUA_Achr10P... | Banana | nucleus | 47.42 | 66.67 |
| Solyc11g028020.1.1 | Tomato | nucleus | 43.47 | 64.13 |
| GSMUA_Achr7P23690_001 | Banana | nucleus | 46.5 | 64.02 |
| PGSC0003DMT400013248 | Potato | nucleus | 44.68 | 63.36 |
| PGSC0003DMT400065614 | Potato | nucleus | 44.07 | 62.5 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 49.54 | 57.39 |
| AT4G18960.1 | Thale cress | nucleus | 43.47 | 56.75 |
| AT2G42830.2 | Thale cress | nucleus | 42.25 | 56.05 |
| AT3G58780.4 | Thale cress | nucleus | 42.25 | 49.47 |
| Solyc06g064840.2.1 | Tomato | nucleus | 29.18 | 47.76 |
| AT2G45650.1 | Thale cress | nucleus | 27.96 | 36.51 |
| AT4G37940.1 | Thale cress | nucleus | 24.92 | 35.96 |
| AT2G22630.2 | Thale cress | nucleus | 24.32 | 35.24 |
| AT1G24260.2 | Thale cress | nucleus | 26.75 | 35.06 |
| AT3G57230.1 | Thale cress | nucleus | 25.23 | 34.58 |
| AT3G02310.1 | Thale cress | nucleus | 26.14 | 34.4 |
| AT5G60910.1 | Thale cress | nucleus | 25.23 | 34.3 |
| AT2G14210.2 | Thale cress | nucleus | 24.32 | 34.04 |
| AT3G61120.1 | Thale cress | nucleus | 24.92 | 33.61 |
| AT5G15800.2 | Thale cress | nucleus | 26.14 | 32.82 |
| AT2G03710.1 | Thale cress | nucleus | 24.92 | 31.78 |
| AT1G26310.1 | Thale cress | nucleus | 23.71 | 30.59 |
| AT3G30260.1 | Thale cress | nucleus | 22.8 | 30.12 |
| AT1G69120.1 | Thale cress | nucleus | 23.1 | 29.69 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:826586 | ProteinID:AEE82819.2 | ArrayExpress:AT4G09960 | EnsemblPlantsGene:AT4G09960 |
| RefSeq:AT4G09960 | TAIR:AT4G09960 | RefSeq:AT4G09960-TAIR-G | EnsemblPlants:AT4G09960.4 | TAIR:AT4G09960.4 | ncoils:Coil |
| UniProt:F4JKV2 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | RefSeq:NP_001319889.1 | PFAM:PF00319 | PFAM:PF01486 | PO:PO:0001078 | PO:PO:0001185 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020003 |
| PO:PO:0020024 | PO:PO:0025022 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF150 | SMART:SM00432 | SUPFAM:SSF55455 | Symbol:STK | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000849212F | SEG:seg | : | : |
Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
Coordinates
chr4:-:6236375..6241281
Molecular Weight (calculated)
38244.9 Da
IEP (calculated)
9.923
GRAVY (calculated)
-0.529
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MHWQVATATA AIAISLWTLE GEQRKKRLQI DILSEKLRVF EEKRIWVCFW DSQKTQNKLS SFFFSFFCFV FFIKEKERER EFPKAELSWV KQILRMGRGK
101: IEIKRIENST NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL IVFSTRGRLY EYANNNIRST IERYKKACSD STNTSTVQEI NAAYYQQESA KLRQQIQTIQ
201: NSNRNLMGDS LSSLSVKELK QVENRLEKAI SRIRSKKHEL LLVEIENAQK RLILQEIELD NENIYLRTKV AEVERYQQHH HQMVSGSEIN AIEALASRNY
301: FAHSIMTAGS GSGNGGSYSD PDKKILHLG
101: IEIKRIENST NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL IVFSTRGRLY EYANNNIRST IERYKKACSD STNTSTVQEI NAAYYQQESA KLRQQIQTIQ
201: NSNRNLMGDS LSSLSVKELK QVENRLEKAI SRIRSKKHEL LLVEIENAQK RLILQEIELD NENIYLRTKV AEVERYQQHH HQMVSGSEIN AIEALASRNY
301: FAHSIMTAGS GSGNGGSYSD PDKKILHLG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.