Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90741 | Canola | nucleus | 74.66 | 94.37 |
| CDY65346 | Canola | cytosol | 7.88 | 92.0 |
| CDY72391 | Canola | nucleus | 18.84 | 73.33 |
| CDX79856 | Canola | nucleus | 20.21 | 66.29 |
| CDY65347 | Canola | nucleus | 34.25 | 63.29 |
| AT4G09960.4 | Thale cress | nucleus | 69.86 | 62.01 |
| CDY71878 | Canola | endoplasmic reticulum | 55.82 | 61.98 |
| CDX71922 | Canola | nucleus | 28.08 | 60.74 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 13.7 | 59.7 |
| GSMUA_Achr10P... | Banana | nucleus | 47.6 | 59.4 |
| GSMUA_Achr7P23690_001 | Banana | nucleus | 46.58 | 56.9 |
| CDX79857 | Canola | nucleus | 44.86 | 53.69 |
| CDY09267 | Canola | nucleus | 44.86 | 52.61 |
| CDX78909 | Canola | nucleus | 44.86 | 51.98 |
| CDX98597 | Canola | nucleus | 44.18 | 51.39 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 49.32 | 50.7 |
| CDX98330 | Canola | nucleus | 42.81 | 50.4 |
| CDY49254 | Canola | nucleus | 43.84 | 46.55 |
| CDX89005 | Canola | nucleus | 42.47 | 44.93 |
| CDY00589 | Canola | nucleus | 41.44 | 44.0 |
| CDY19977 | Canola | nucleus | 15.07 | 43.14 |
| CDX99406 | Canola | nucleus | 45.55 | 42.63 |
| CDY48451 | Canola | nucleus | 21.92 | 41.83 |
| CDY13236 | Canola | mitochondrion | 28.77 | 41.79 |
| CDX67765 | Canola | nucleus | 44.18 | 37.07 |
| CDY01574 | Canola | nucleus | 15.07 | 35.77 |
| CDX69345 | Canola | nucleus | 26.71 | 34.36 |
| CDX90394 | Canola | nucleus | 26.71 | 34.06 |
| CDX75686 | Canola | nucleus | 26.03 | 33.19 |
| CDY18911 | Canola | nucleus | 26.71 | 32.91 |
| CDY25613 | Canola | nucleus | 25.68 | 32.89 |
| CDY43239 | Canola | nucleus | 28.08 | 32.8 |
| CDY34718 | Canola | nucleus | 28.08 | 32.54 |
| CDY57524 | Canola | nucleus | 27.74 | 32.4 |
| CDX89496 | Canola | nucleus | 25.34 | 32.31 |
| CDX75412 | Canola | nucleus | 26.37 | 32.08 |
| CDX72465 | Canola | nucleus | 26.37 | 32.08 |
| CDY18912 | Canola | nucleus | 26.37 | 31.95 |
| CDY26462 | Canola | nucleus | 27.74 | 31.89 |
| CDY66153 | Canola | nucleus | 26.71 | 31.84 |
| CDY11824 | Canola | nucleus | 26.71 | 31.84 |
| CDX69036 | Canola | nucleus | 26.03 | 31.67 |
| CDY49287 | Canola | nucleus | 26.03 | 31.67 |
| CDX78653 | Canola | nucleus | 28.08 | 31.66 |
| CDX70651 | Canola | nucleus | 28.08 | 31.66 |
| CDX74754 | Canola | nucleus | 27.74 | 31.64 |
| CDY15724 | Canola | nucleus | 27.05 | 31.35 |
| CDY42841 | Canola | nucleus | 25.68 | 31.25 |
| CDY36077 | Canola | nucleus | 23.63 | 31.22 |
| CDY34564 | Canola | nucleus | 23.29 | 31.19 |
| CDY58690 | Canola | nucleus | 25.68 | 31.12 |
| CDX69499 | Canola | nucleus | 28.08 | 31.06 |
| CDY27603 | Canola | nucleus | 26.71 | 30.83 |
| CDY47002 | Canola | nucleus | 25.34 | 30.71 |
| CDX84935 | Canola | nucleus | 26.37 | 30.68 |
| CDY16832 | Canola | nucleus | 25.0 | 30.29 |
| CDY02185 | Canola | nucleus | 25.0 | 30.29 |
| CDY53885 | Canola | nucleus | 26.37 | 29.96 |
| CDY03905 | Canola | nucleus | 27.4 | 29.63 |
| CDY04164 | Canola | nucleus | 26.03 | 29.46 |
| CDY02978 | Canola | nucleus | 25.68 | 29.3 |
| CDY51202 | Canola | nucleus | 25.68 | 29.18 |
| CDY65811 | Canola | nucleus | 25.0 | 28.52 |
| CDX89097 | Canola | nucleus | 23.97 | 28.46 |
| CDX95960 | Canola | nucleus | 24.32 | 27.73 |
| CDY33554 | Canola | nucleus | 24.32 | 27.73 |
| CDY00082 | Canola | nucleus | 23.29 | 27.42 |
| CDY45899 | Canola | nucleus | 22.95 | 26.91 |
| CDX86353 | Canola | nucleus | 22.95 | 26.91 |
| CDY04265 | Canola | nucleus | 25.0 | 26.35 |
| CDY07357 | Canola | nucleus | 25.0 | 25.26 |
| CDY33113 | Canola | nucleus | 25.68 | 24.27 |
| CDX71166 | Canola | nucleus | 24.66 | 20.69 |
| CDY42485 | Canola | nucleus | 24.32 | 18.78 |
| CDX85287 | Canola | nucleus | 10.62 | 16.58 |
| CDY45709 | Canola | nucleus | 9.59 | 16.18 |
| CDY49686 | Canola | nucleus | 9.25 | 15.61 |
| CDY35780 | Canola | nucleus | 10.27 | 15.23 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078J347 | UniProt:A0A078J347 | EnsemblPlants:CDY60297 | ProteinID:CDY60297 |
| ProteinID:CDY60297.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00028475001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF150 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDB1FA | : |
Description
BnaC03g72890DBnaC03g72890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J347]
Coordinates
chrLK033865:-:30020..41364
Molecular Weight (calculated)
33302.8 Da
IEP (calculated)
10.041
GRAVY (calculated)
-0.547
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSNRTIMGE GEWQFRTTKN RFHVITGENT VVRKVTTTAP CNYYGFKEAL HILCTLIGRG KIEIKRIENS TNRQVTFCKR RNGLLKKAYE LAVLCDAEVA
101: LIVFSTRGRL YEYANDNIRA TFERYKNSSS GNANTHSVQE INAAYYQQES AKLRQQIQTI QNSNRLAAFS GIFINSLSAL NVKELKQVEN RLEKAISRIR
201: SKKHELLLAE IENLHKREIK LDNESIYLRT KIAEVERFQQ HHHQMVSGTE MTAIEALASR NYFAHNIMTI GSGSGAGHGC SYSDPDKKTH LG
101: LIVFSTRGRL YEYANDNIRA TFERYKNSSS GNANTHSVQE INAAYYQQES AKLRQQIQTI QNSNRLAAFS GIFINSLSAL NVKELKQVEN RLEKAISRIR
201: SKKHELLLAE IENLHKREIK LDNESIYLRT KIAEVERFQQ HHHQMVSGTE MTAIEALASR NYFAHNIMTI GSGSGAGHGC SYSDPDKKTH LG
001: MPTYIRSMNL MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY
101: QQESAKLRQQ IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI
201: NAIEALASRN YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
101: QQESAKLRQQ IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI
201: NAIEALASRN YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.