Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66153 | Canola | nucleus | 99.59 | 99.59 |
| Bra010955.1-P | Field mustard | nucleus | 99.18 | 99.59 |
| AT1G24260.2 | Thale cress | nucleus | 88.98 | 86.85 |
| KRG97386 | Soybean | nucleus | 50.61 | 86.11 |
| CDY27603 | Canola | nucleus | 88.57 | 85.77 |
| CDX84935 | Canola | nucleus | 86.94 | 84.86 |
| CDY15724 | Canola | nucleus | 86.12 | 83.73 |
| CDY03905 | Canola | nucleus | 87.35 | 79.26 |
| VIT_01s0010g03900.t01 | Wine grape | nucleus | 69.39 | 76.92 |
| KRH58800 | Soybean | nucleus | 75.1 | 75.41 |
| KRH42695 | Soybean | nucleus | 74.29 | 74.59 |
| Solyc05g015750.2.1 | Tomato | nucleus | 71.84 | 73.03 |
| PGSC0003DMT400056363 | Potato | nucleus | 71.84 | 73.03 |
| KRH31527 | Soybean | nucleus | 71.43 | 72.02 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 68.16 | 68.72 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 17.96 | 65.67 |
| CDY72391 | Canola | nucleus | 18.37 | 60.0 |
| CDY26462 | Canola | nucleus | 61.22 | 59.06 |
| CDY57524 | Canola | nucleus | 59.59 | 58.4 |
| CDY34718 | Canola | nucleus | 59.59 | 57.94 |
| CDY43239 | Canola | nucleus | 58.37 | 57.2 |
| CDX69499 | Canola | nucleus | 61.63 | 57.2 |
| CDX78653 | Canola | nucleus | 59.59 | 56.37 |
| CDX70651 | Canola | nucleus | 59.18 | 55.98 |
| CDY19977 | Canola | nucleus | 21.63 | 51.96 |
| CDX79856 | Canola | nucleus | 18.78 | 51.69 |
| CDX71922 | Canola | nucleus | 26.12 | 47.41 |
| CDY04164 | Canola | nucleus | 48.98 | 46.51 |
| CDY51202 | Canola | nucleus | 48.57 | 46.3 |
| CDY02978 | Canola | nucleus | 48.16 | 46.09 |
| CDY34564 | Canola | nucleus | 38.78 | 43.58 |
| CDY36077 | Canola | nucleus | 39.18 | 43.44 |
| CDY48451 | Canola | nucleus | 26.94 | 43.14 |
| CDY18911 | Canola | nucleus | 41.22 | 42.62 |
| CDY18912 | Canola | nucleus | 41.63 | 42.32 |
| CDX74754 | Canola | nucleus | 43.27 | 41.41 |
| CDY53885 | Canola | nucleus | 43.27 | 41.25 |
| CDY42841 | Canola | nucleus | 38.78 | 39.58 |
| CDX89097 | Canola | nucleus | 39.18 | 39.02 |
| CDY47002 | Canola | nucleus | 37.96 | 38.59 |
| CDY16832 | Canola | nucleus | 37.96 | 38.59 |
| CDY58690 | Canola | nucleus | 37.96 | 38.59 |
| CDY65811 | Canola | nucleus | 40.0 | 38.28 |
| CDY33113 | Canola | nucleus | 48.16 | 38.19 |
| CDY02185 | Canola | nucleus | 37.55 | 38.17 |
| CDY45899 | Canola | nucleus | 38.78 | 38.15 |
| CDY33554 | Canola | nucleus | 39.18 | 37.5 |
| CDX95960 | Canola | nucleus | 38.78 | 37.11 |
| CDX86353 | Canola | nucleus | 37.55 | 36.95 |
| CDY00082 | Canola | nucleus | 37.14 | 36.69 |
| CDY09267 | Canola | nucleus | 37.14 | 36.55 |
| CDX90741 | Canola | nucleus | 34.29 | 36.36 |
| CDX78909 | Canola | nucleus | 36.73 | 35.71 |
| CDX79857 | Canola | nucleus | 35.51 | 35.66 |
| CDX98597 | Canola | nucleus | 36.33 | 35.46 |
| CDY04265 | Canola | nucleus | 39.59 | 35.02 |
| CDX98330 | Canola | nucleus | 34.29 | 33.87 |
| CDY07357 | Canola | nucleus | 39.59 | 33.56 |
| CDX90394 | Canola | nucleus | 31.02 | 33.19 |
| CDX69345 | Canola | nucleus | 30.61 | 33.04 |
| CDY25613 | Canola | nucleus | 30.2 | 32.46 |
| CDX75686 | Canola | nucleus | 30.2 | 32.31 |
| CDX89496 | Canola | nucleus | 29.8 | 31.88 |
| CDY49254 | Canola | nucleus | 35.51 | 31.64 |
| CDX69036 | Canola | nucleus | 30.61 | 31.25 |
| CDX75412 | Canola | nucleus | 30.61 | 31.25 |
| CDY45709 | Canola | nucleus | 21.63 | 30.64 |
| CDY49686 | Canola | nucleus | 21.63 | 30.64 |
| CDX72465 | Canola | nucleus | 29.39 | 30.0 |
| CDY49287 | Canola | nucleus | 29.39 | 30.0 |
| CDY00589 | Canola | nucleus | 33.47 | 29.82 |
| CDX89005 | Canola | nucleus | 33.47 | 29.71 |
| CDX99406 | Canola | nucleus | 36.73 | 28.85 |
| CDY65347 | Canola | nucleus | 17.55 | 27.22 |
| CDX85287 | Canola | nucleus | 20.41 | 26.74 |
| CDY60297 | Canola | nucleus | 31.84 | 26.71 |
| CDY35780 | Canola | nucleus | 20.82 | 25.89 |
| CDY42485 | Canola | nucleus | 39.59 | 25.66 |
| CDY01574 | Canola | nucleus | 12.65 | 25.2 |
| CDX67765 | Canola | nucleus | 34.69 | 24.43 |
| CDY13236 | Canola | mitochondrion | 20.0 | 24.38 |
| CDX71166 | Canola | nucleus | 31.43 | 22.13 |
| CDY71878 | Canola | endoplasmic reticulum | 22.86 | 21.29 |
| CDY65346 | Canola | cytosol | 1.22 | 12.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078FFT0 | UniProt:A0A078FFT0 | EnsemblPlants:CDY11824 | ProteinID:CDY11824 |
| ProteinID:CDY11824.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00050088001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF351 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE23AC | SEG:seg |
Description
BnaC03g57540DBnaC03g57540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFT0]
Coordinates
chrLK032014:-:845176..847308
Molecular Weight (calculated)
28294.8 Da
IEP (calculated)
8.433
GRAVY (calculated)
-0.731
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENTINRQVT FAKRRGGVLK KAYELSVLCD AEVALIIFSN RGKLFEFCSN SSMLKTLERY QKCNYGPPEP NVPSREALAV ELSSQQEYLK
101: LKQRYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRGLRTQFM LDQLNDLQSK ERMLSDTNKT LRLRLADGYQ MPFQLNPNQE EVHVDYGHHQ
201: PQQQAFFQPL EYEPIFQIGY HQGQQQDHGM GAGPSANNYM LGWLP
101: LKQRYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRGLRTQFM LDQLNDLQSK ERMLSDTNKT LRLRLADGYQ MPFQLNPNQE EVHVDYGHHQ
201: PQQQAFFQPL EYEPIFQIGY HQGQQQDHGM GAGPSANNYM LGWLP
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAV ELSSQQEYLK
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.