Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004007.1-P | Field mustard | nucleus | 93.77 | 100.0 |
| CDY04265 | Canola | nucleus | 94.46 | 98.56 |
| CDY33554 | Canola | nucleus | 85.12 | 96.09 |
| CDY65811 | Canola | nucleus | 84.78 | 95.7 |
| CDX95960 | Canola | nucleus | 84.43 | 95.31 |
| AT1G69120.1 | Thale cress | nucleus | 83.39 | 94.14 |
| CDY36077 | Canola | nucleus | 58.82 | 76.92 |
| CDY34564 | Canola | nucleus | 56.75 | 75.23 |
| KRH07467 | Soybean | nucleus | 60.55 | 74.15 |
| KRH45412 | Soybean | nucleus | 58.82 | 72.03 |
| KRH70974 | Soybean | nucleus | 55.36 | 65.84 |
| CDY19977 | Canola | nucleus | 23.18 | 65.69 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 15.22 | 65.67 |
| PGSC0003DMT400072888 | Potato | nucleus | 53.98 | 63.93 |
| Solyc05g056620.1.1 | Tomato | nucleus | 53.98 | 63.93 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 48.1 | 57.44 |
| EER90862 | Sorghum | nucleus | 47.4 | 55.92 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 47.4 | 55.69 |
| CDY72391 | Canola | nucleus | 14.19 | 54.67 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 46.71 | 54.44 |
| CDY42841 | Canola | nucleus | 44.64 | 53.75 |
| CDY58690 | Canola | nucleus | 44.64 | 53.53 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 44.98 | 53.28 |
| Os03t0752800-02 | Rice | nucleus | 44.98 | 52.85 |
| CDY02185 | Canola | nucleus | 43.94 | 52.7 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 44.64 | 52.65 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 45.33 | 52.4 |
| CDY16832 | Canola | nucleus | 43.6 | 52.28 |
| CDY47002 | Canola | nucleus | 43.6 | 52.28 |
| EER97510 | Sorghum | nucleus | 44.98 | 51.38 |
| EER95753 | Sorghum | nucleus | 47.75 | 51.11 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 44.29 | 51.0 |
| Os07t0108900-02 | Rice | nucleus | 47.06 | 50.94 |
| Zm00001d022088_P004 | Maize | nucleus | 45.33 | 50.78 |
| Zm00001d018667_P003 | Maize | nucleus | 47.4 | 50.55 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 47.06 | 50.18 |
| GSMUA_Achr10P... | Banana | nucleus | 49.48 | 50.18 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 43.94 | 50.0 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 47.06 | 49.63 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 47.06 | 49.63 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 39.1 | 49.13 |
| Os07t0605200-01 | Rice | nucleus | 41.87 | 48.59 |
| Zm00001d013259_P002 | Maize | nucleus | 46.71 | 48.39 |
| CDX79856 | Canola | nucleus | 14.53 | 47.19 |
| CDX86353 | Canola | nucleus | 40.48 | 46.99 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 43.25 | 46.82 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 43.25 | 46.82 |
| CDY00082 | Canola | nucleus | 40.14 | 46.77 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 42.56 | 46.77 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 42.91 | 46.44 |
| CDY45899 | Canola | nucleus | 39.45 | 45.78 |
| Zm00001d034045_P003 | Maize | nucleus | 46.02 | 45.7 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 41.87 | 45.49 |
| Zm00001d007949_P001 | Maize | nucleus | 47.75 | 45.25 |
| HORVU2Hr1G063800.7 | Barley | nucleus, plastid | 46.71 | 44.12 |
| HORVU5Hr1G095630.3 | Barley | nucleus, plastid | 46.02 | 43.32 |
| CDY66153 | Canola | nucleus | 33.91 | 40.0 |
| CDY15724 | Canola | nucleus | 34.6 | 39.68 |
| CDY11824 | Canola | nucleus | 33.56 | 39.59 |
| CDX84935 | Canola | nucleus | 34.26 | 39.44 |
| CDY34718 | Canola | nucleus | 34.26 | 39.29 |
| CDY18911 | Canola | nucleus | 32.18 | 39.24 |
| CDY48451 | Canola | nucleus | 20.76 | 39.22 |
| CDY26462 | Canola | nucleus | 34.26 | 38.98 |
| CDY57524 | Canola | nucleus | 33.56 | 38.8 |
| CDY27603 | Canola | nucleus | 33.91 | 38.74 |
| CDX78653 | Canola | nucleus | 34.6 | 38.61 |
| CDX71922 | Canola | nucleus | 17.99 | 38.52 |
| CDY43239 | Canola | nucleus | 33.22 | 38.4 |
| CDX70651 | Canola | nucleus | 34.26 | 38.22 |
| CDX69499 | Canola | nucleus | 34.6 | 37.88 |
| CDY18912 | Canola | nucleus | 31.49 | 37.76 |
| CDX74754 | Canola | nucleus | 32.87 | 37.11 |
| CDY03905 | Canola | nucleus | 34.6 | 37.04 |
| CDY53885 | Canola | nucleus | 32.87 | 36.97 |
| CDY51202 | Canola | nucleus | 32.53 | 36.58 |
| Os12t0501700-00 | Rice | nucleus | 29.41 | 36.48 |
| KXG23502 | Sorghum | nucleus | 28.03 | 36.32 |
| CDY02978 | Canola | nucleus | 31.83 | 35.94 |
| CDX85287 | Canola | nucleus | 22.84 | 35.29 |
| CDX89097 | Canola | nucleus | 29.76 | 34.96 |
| CDY04164 | Canola | nucleus | 30.8 | 34.5 |
| CDY35780 | Canola | nucleus | 22.15 | 32.49 |
| CDX79857 | Canola | nucleus | 27.34 | 32.38 |
| CDX90394 | Canola | nucleus | 25.61 | 32.31 |
| Zm00001d023736_P001 | Maize | nucleus | 28.72 | 32.3 |
| CDX90741 | Canola | nucleus | 25.61 | 32.03 |
| CDY25613 | Canola | nucleus | 25.26 | 32.02 |
| CDX69345 | Canola | nucleus | 24.91 | 31.72 |
| CDX75686 | Canola | nucleus | 24.91 | 31.44 |
| CDX78909 | Canola | nucleus | 27.34 | 31.35 |
| CDY09267 | Canola | nucleus | 26.99 | 31.33 |
| CDX98597 | Canola | nucleus | 26.99 | 31.08 |
| CDX89496 | Canola | nucleus | 24.57 | 31.0 |
| CDX75412 | Canola | nucleus | 25.26 | 30.42 |
| CDX98330 | Canola | nucleus | 25.95 | 30.24 |
| CDX69036 | Canola | nucleus | 24.91 | 30.0 |
| CDY33113 | Canola | nucleus | 31.49 | 29.45 |
| CDX72465 | Canola | nucleus | 24.22 | 29.17 |
| CDY49287 | Canola | nucleus | 24.22 | 29.17 |
| CDY00589 | Canola | nucleus | 25.95 | 27.27 |
| CDY49254 | Canola | nucleus | 25.95 | 27.27 |
| CDX89005 | Canola | nucleus | 25.61 | 26.81 |
| CDX99406 | Canola | nucleus | 27.34 | 25.32 |
| CDY60297 | Canola | nucleus | 25.26 | 25.0 |
| CDY45709 | Canola | nucleus | 14.53 | 24.28 |
| CDY49686 | Canola | nucleus | 14.53 | 24.28 |
| CDY65347 | Canola | nucleus | 13.15 | 24.05 |
| CDY01574 | Canola | nucleus | 10.03 | 23.58 |
| CDY42485 | Canola | nucleus | 29.07 | 22.22 |
| CDX67765 | Canola | nucleus | 26.64 | 22.13 |
| CDX71166 | Canola | nucleus | 26.3 | 21.84 |
| CDY13236 | Canola | mitochondrion | 14.88 | 21.39 |
| CDY71878 | Canola | endoplasmic reticulum | 15.92 | 17.49 |
| CDY65346 | Canola | cytosol | 0.35 | 4.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078F2N8 | UniProt:A0A078F2N8 | EnsemblPlants:CDY07357 | ProteinID:CDY07357 |
| ProteinID:CDY07357.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00124318001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF244 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EECAA0 | SEG:seg |
Description
BnaA07g24360DBnaA07g24360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2N8]
Coordinates
chrLK031978:+:163674..167859
Molecular Weight (calculated)
33913.5 Da
IEP (calculated)
7.631
GRAVY (calculated)
-0.850
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSGGDTWDG PVEIVPLKGI KMGRGRVQLK RIENKINRQV TFSKRRAGLM KKAHEISVLC DAEVALVVFS HKGKLFEYST DSCMEKILER YERYSYAERQ
101: LIAPESDSNT NWSMEYNRLK AKIELLERNQ RHYLGEDLQA MSSKELQNLE QQLDTALKHI RSRKNQLMYD SINELQRKEK AIQEQNSMLS KQIKEREKVL
201: RAQQEQWDEQ NHGHNMPPPP PPQQHQIQHP YMLSHQPSPF LNMGYTYVDN FVSYIMGLYQ EEDQMTMRRN DLDLSLEPVY NCNLGCFAA
101: LIAPESDSNT NWSMEYNRLK AKIELLERNQ RHYLGEDLQA MSSKELQNLE QQLDTALKHI RSRKNQLMYD SINELQRKEK AIQEQNSMLS KQIKEREKVL
201: RAQQEQWDEQ NHGHNMPPPP PPQQHQIQHP YMLSHQPSPF LNMGYTYVDN FVSYIMGLYQ EEDQMTMRRN DLDLSLEPVY NCNLGCFAA
001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGGLYQEDD PMAMRRNDLE LTLEPVYNCN LGCFAA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGGLYQEDD PMAMRRNDLE LTLEPVYNCN LGCFAA
Arabidopsis Description
AP1AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.