CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69036
CDX69345
CDX72465
CDX72816
CDX73678
CDX74754
CDX74755
CDX75412
CDX75686
CDX76346
CDX76906
CDX78909
CDX89097
CDX89487
CDX90394
CDX92401
CDX92641
CDX95314
CDX95960
CDX96334
CDX98597
CDX98780
CDX99406
CDY02185
CDY03445
CDY03698
CDY04265
CDY07357
CDY09267
CDY10829
CDY11019
CDY13746
CDY16832
CDY18911
CDY18912
CDY23174
CDY25607
CDY27368
CDY33554
CDY34718
CDY36686
CDY37054
CDY37947
CDY41268
CDY42485
CDY42841
CDY43239
CDY47002
CDY49287
CDY53885
CDY53886
CDY55821
CDY57524
CDY58690
CDY60686
CDY60689
CDY65811
CDY68007
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37940.1	CDX95960	AT1G69120.1	15805477
AT4G37940.1	CDY04265	AT1G69120.1	15805477
AT4G37940.1	CDY07357	AT1G69120.1	15805477
AT4G37940.1	CDY33554	AT1G69120.1	15805477
AT4G37940.1	CDY65811	AT1G69120.1	15805477
AT4G37940.1	CDX72816	AT1G71692.1	15805477
AT4G37940.1	CDX96334	AT1G71692.1	15805477
AT4G37940.1	CDY03698	AT1G71692.1	15805477
AT4G37940.1	CDY36686	AT1G71692.1	15805477
AT4G37940.1	CDY37947	AT1G71692.1	15805477
AT4G37940.1	CDX76906	AT2G22540.1	15805477
AT4G37940.1	CDX89487	AT2G22540.1	15805477
AT4G37940.1	CDY13746	AT2G22540.1	15805477
AT4G37940.1	CDY25607	AT2G22540.1	15805477
AT4G37940.1	CDX74754	AT2G45650.1	15805477
AT4G37940.1	CDY18911	AT2G45650.1	15805477
AT4G37940.1	CDY18912	AT2G45650.1	15805477
AT4G37940.1	CDY53885	AT2G45650.1	15805477
AT4G37940.1	CDY60686	AT2G45650.1	15805477
AT4G37940.1	CDX74755	AT2G45660.1	15805477
AT4G37940.1	CDY27368	AT2G45660.1	15805477
AT4G37940.1	CDY37054	AT2G45660.1	15805477
AT4G37940.1	CDY53886	AT2G45660.1	15805477
AT4G37940.1	CDY60689	AT2G45660.1	15805477
AT4G37940.1	CDY69077	AT2G45660.1	15805477
AT4G37940.1	CDY34718	AT3G02310.1	15805477
AT4G37940.1	CDY43239	AT3G02310.1	15805477
AT4G37940.1	CDY57524	AT3G02310.1	15805477
AT4G37940.1	CDX73678	AT3G51920.1	17360592
AT4G37940.1	CDX95314	AT3G51920.1	17360592
AT4G37940.1	CDY23174	AT3G51920.1	17360592
AT4G37940.1	CDX69036	AT3G57230.1	15805477
AT4G37940.1	CDX72465	AT3G57230.1	15805477
AT4G37940.1	CDX75412	AT3G57230.1	15805477
AT4G37940.1	CDY49287	AT3G57230.1	15805477
AT4G37940.1	CDX89097	AT3G61120.1	15805477
AT4G37940.1	CDY42485	AT3G61120.1	15805477
AT4G37940.1	CDX78909	AT4G18960.1	15805477
AT4G37940.1	CDX98597	AT4G18960.1	15805477
AT4G37940.1	CDX99406	AT4G18960.1	15805477
AT4G37940.1	CDY09267	AT4G18960.1	15805477
AT4G37940.1	CDX76346	AT4G22950.1	15805477
AT4G37940.1	CDX98780	AT4G22950.1	15805477
AT4G37940.1	CDY10829	AT4G22950.1	15805477
AT4G37940.1	CDY41268	AT4G22950.1	15805477
AT4G37940.1	CDY55821	AT4G22950.1	15805477
AT4G37940.1	CDY68007	AT4G22950.1	15805477
AT4G37940.1	CDX92641	AT4G24540.1	15805477
AT4G37940.1	CDY03445	AT4G24540.1	15805477
AT4G37940.1	CDY11019	AT4G24540.1	15805477
AT4G37940.1	CDX69345	AT4G37940.1	15805477
AT4G37940.1	CDX75686	AT4G37940.1	15805477
AT4G37940.1	CDX90394	AT4G37940.1	15805477
AT4G37940.1	CDX92401	AT5G21274.1	17360592
AT4G37940.1	CDY02185	AT5G60910.1	15805477
AT4G37940.1	CDY16832	AT5G60910.1	15805477
AT4G37940.1	CDY42841	AT5G60910.1	15805477
AT4G37940.1	CDY47002	AT5G60910.1	15805477
AT4G37940.1	CDY58690	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011797.1-P	Field mustard	nucleus	99.56	100.0
CDX69345	Canola	nucleus	96.94	97.8
CDX90394	Canola	nucleus	92.14	92.14
AT4G37940.1	Thale cress	nucleus	90.83	91.23
CDY25613	Canola	nucleus	78.17	78.51
CDX89496	Canola	nucleus	74.67	74.67
CDY48451	Canola	nucleus	45.85	68.63
VIT_00s0211g00180.t01	Wine grape	nucleus	65.94	67.41
Solyc02g091550.1.1	Tomato	nucleus	64.63	62.98
KRH74451	Soybean	nucleus	58.52	60.36
KRH39494	Soybean	nucleus	58.08	60.18
CDX72465	Canola	nucleus	60.7	57.92
CDY49287	Canola	nucleus	60.7	57.92
CDX75412	Canola	nucleus	59.39	56.67
CDX69036	Canola	nucleus	59.39	56.67
CDY60686	Canola	cytosol, nucleus, plastid	15.28	52.24
CDY72391	Canola	nucleus	16.16	49.33
CDX79856	Canola	nucleus	17.03	43.82
CDY19977	Canola	nucleus	18.78	42.16
CDX71922	Canola	nucleus	24.02	40.74
CDX71166	Canola	nucleus	55.9	36.78
CDX90741	Canola	nucleus	34.5	34.2
CDY34564	Canola	nucleus	32.31	33.95
CDY36077	Canola	nucleus	32.75	33.94
CDY09267	Canola	nucleus	34.5	31.73
CDX98597	Canola	nucleus	34.5	31.47
CDX78909	Canola	nucleus	34.5	31.35
CDY18911	Canola	nucleus	32.31	31.22
CDY57524	Canola	nucleus	34.06	31.2
CDX79857	Canola	nucleus	33.19	31.15
CDY26462	Canola	nucleus	34.5	31.1
CDY43239	Canola	nucleus	33.62	30.8
CDX84935	Canola	nucleus	33.62	30.68
CDY34718	Canola	nucleus	33.62	30.56
CDY27603	Canola	nucleus	33.62	30.43
CDY18912	Canola	nucleus	31.88	30.29
CDY11824	Canola	nucleus	32.31	30.2
CDY66153	Canola	nucleus	32.31	30.2
CDY15724	Canola	nucleus	33.19	30.16
CDY42841	Canola	nucleus	31.44	30.0
CDY58690	Canola	nucleus	31.44	29.88
CDY16832	Canola	nucleus	31.44	29.88
CDY47002	Canola	nucleus	31.44	29.88
CDX98330	Canola	nucleus	32.31	29.84
CDX69499	Canola	nucleus	34.06	29.55
CDY02185	Canola	nucleus	31.0	29.46
CDX78653	Canola	nucleus	33.19	29.34
CDX89097	Canola	nucleus	31.44	29.27
CDY65347	Canola	nucleus	20.09	29.11
CDX70651	Canola	nucleus	32.75	28.96
CDY65811	Canola	nucleus	32.31	28.91
CDX74754	Canola	nucleus	32.31	28.91
CDY53885	Canola	nucleus	32.31	28.79
CDX86353	Canola	nucleus	31.0	28.51
CDY04164	Canola	nucleus	31.88	28.29
CDY03905	Canola	nucleus	33.19	28.15
CDY33554	Canola	nucleus	31.44	28.12
CDX95960	Canola	nucleus	31.44	28.12
CDY02978	Canola	nucleus	31.44	28.12
CDY49254	Canola	nucleus	33.62	28.0
CDY00082	Canola	nucleus	30.13	27.82
CDY45899	Canola	nucleus	30.13	27.71
CDY51202	Canola	nucleus	31.0	27.63
CDX89005	Canola	nucleus	31.44	26.09
CDY60297	Canola	nucleus	33.19	26.03
CDY04265	Canola	nucleus	31.44	25.99
CDY00589	Canola	nucleus	31.0	25.82
CDX99406	Canola	nucleus	34.93	25.64
CDY07357	Canola	nucleus	31.44	24.91
CDY33113	Canola	nucleus	31.88	23.62
CDY13236	Canola	mitochondrion	19.21	21.89
CDX67765	Canola	nucleus	32.75	21.55
CDY01574	Canola	nucleus	10.92	20.33
CDX85287	Canola	nucleus	15.72	19.25
CDY42485	Canola	nucleus	31.44	19.05
CDY71878	Canola	endoplasmic reticulum	21.83	19.01
CDY49686	Canola	nucleus	13.1	17.34
CDY45709	Canola	nucleus	13.1	17.34
CDY35780	Canola	nucleus	14.41	16.75
CDY65346	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078CEU4	EnsemblPlants:CDX75686	ProteinID:CDX75686	ProteinID:CDX75686.1
ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00121622001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF263	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EEC4DB	SEG:seg	:	:

Description

BnaA01g00160D

Coordinates

chrLK031804:-:2354803..2357788

Molecular Weight (calculated)

26615.7 Da

IEP (calculated)

9.298

GRAVY (calculated)

-0.772

Length

229 amino acids

Sequence
(BLAST)

001: MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFSSS SMNSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
101: HALQETHRRQ IMGEQLNGLS VNELNNLENQ LEISLRGVRM KKEQMLTHEI QELSQKRYLI HQENVELSRK VQRIHQENVE LYKKAYTTNT NGFTHRELVV
201: ADDESHTQIR LQLSQPEHSD YETPPRGSE

Best Arabidopsis Sequence Match ( AT4G37940.1 )
(BLAST)

001: MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE

Arabidopsis Description

AGL21Agamous-like MADS-box protein AGL21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.