Factsheet for VIT_00s0211g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00180.t01
VIT_02s0025g04650.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_10s0003g02070.t01
VIT_14s0083g01050.t01
VIT_15s0048g01270.t01
VIT_17s0000g04990.t01
VIT_18s0001g07460.t01
VIT_18s0041g02140.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37940.1	VIT_18s0041g02140.t01	AT1G71692.1	15805477
AT4G37940.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT4G37940.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT4G37940.1	VIT_15s0048g01270.t01	AT2G45650.1	15805477
AT4G37940.1	VIT_14s0083g01050.t01	AT3G02310.1	15805477
AT4G37940.1	VIT_15s0048g01270.t01	AT3G61120.1	15805477
AT4G37940.1	VIT_10s0003g02070.t01	AT4G18960.1	15805477
AT4G37940.1	VIT_02s0025g04650.t01	AT4G22950.1	15805477
AT4G37940.1	VIT_18s0001g07460.t01	AT4G24540.1	15805477
AT4G37940.1	VIT_00s0211g00180.t01	AT4G37940.1	15805477
AT4G37940.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT4G37940.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592
AT4G37940.1	VIT_17s0000g04990.t01	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g07900.t01	Wine grape	nucleus	77.68	72.5
Solyc02g091550.1.1	Tomato	nucleus	70.54	67.23
KRH39494	Soybean	nucleus	66.07	66.97
CDX69345	Canola	nucleus	67.86	66.96
KRH74451	Soybean	nucleus	66.07	66.67
Bra011797.1-P	Field mustard	nucleus	67.41	66.23
CDX75686	Canola	nucleus	67.41	65.94
CDX90394	Canola	nucleus	67.41	65.94
Bra010623.1-P	Field mustard	nucleus	62.95	65.89
AT4G37940.1	Thale cress	nucleus	66.07	64.91
Bra039921.1-P	Field mustard	nucleus	64.73	63.88
CDY25613	Canola	nucleus	64.29	63.16
Bra030222.1-P	Field mustard	nucleus	63.84	63.0
CDX89496	Canola	nucleus	63.84	62.45
AT2G22630.2	Thale cress	nucleus	62.95	62.11
VIT_14s0068g01800.t01	Wine grape	nucleus	16.52	57.81
VIT_18s0041g01880.t01	Wine grape	nucleus	40.62	40.81
VIT_10s0003g02070.t01	Wine grape	nucleus	36.16	35.84
VIT_01s0010g03900.t01	Wine grape	nucleus	34.82	35.29
VIT_17s0000g01230.t01	Wine grape	nucleus	35.71	34.04
VIT_14s0083g01050.t01	Wine grape	nucleus	36.61	33.74
VIT_17s0000g04990.t01	Wine grape	nucleus	36.61	33.74
VIT_17s0000g05000.t01	Wine grape	nucleus	36.61	33.33
VIT_15s0048g01270.t01	Wine grape	nucleus	36.16	33.2
VIT_16s0022g02330.t01	Wine grape	nucleus	36.61	32.93
VIT_01s0011g00110.t01	Wine grape	nucleus	35.27	32.51
VIT_01s0011g00100.t01	Wine grape	nucleus	34.38	31.95
VIT_14s0083g01030.t01	Wine grape	nucleus	33.93	30.77
VIT_12s0142g00360.t01	Wine grape	nucleus	36.16	29.56

Protein Annotations

EntrezGene:100242400	wikigene:100242400	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CBI25708	ProteinID:CBI25708.3
ncoils:Coil	UniProt:D7T5C5	EMBL:FN595522	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	EntrezGene:LOC100242400	wikigene:LOC100242400	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF263	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0001BE2C56	ArrayExpress:VIT_00s0211g00180	EnsemblPlantsGene:VIT_00s0211g00180	EnsemblPlants:VIT_00s0211g00180.t01	RefSeq:XP_002273556	RefSeq:XP_002273556.2

Description

No Description!

Coordinates

chrUn:-:13000000..13020905

Molecular Weight (calculated)

25844.3 Da

IEP (calculated)

9.688

GRAVY (calculated)

-0.644

Length

224 amino acids

Sequence
(BLAST)

001: MGRGKIEIRR IDNSTSRQVT FSKRRKGLLK KAKELAILCD AEVGLIIFSS TGKLYEFAST SMKSAIDRYH KSKEENHQLL NPASEVKFWQ REAAILRQQL
101: QNLQENHRQL MGEELYGLSV KDLQNLENQL EMSLRGVHMK KEQILTNEIE ELKQKGNLVQ QENVELHKKM TLIRQENMEL YKKVYSTRDV TAASTNAIIP
201: YGFSIGEDSA VPIHLELSQP KQRC

Best Arabidopsis Sequence Match ( AT4G37940.1 )
(BLAST)

001: MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE

Arabidopsis Description

AGL21Agamous-like MADS-box protein AGL21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.