Factsheet for VIT_16s0022g02330.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g01800.t01	Wine grape	nucleus	16.06	62.5
VIT_15s0048g01270.t01	Wine grape	nucleus	57.83	59.02
VIT_14s0083g01050.t01	Wine grape	nucleus	49.8	51.03
VIT_01s0010g03900.t01	Wine grape	nucleus	44.98	50.68
VIT_01s0011g00110.t01	Wine grape	nucleus	47.39	48.56
VIT_17s0000g05000.t01	Wine grape	nucleus	47.79	48.37
KRH09173	Soybean	nucleus	44.98	47.46
KRH38649	Soybean	nucleus	45.38	46.31
VIT_01s0011g00100.t01	Wine grape	nucleus	44.58	46.06
VIT_14s0083g01030.t01	Wine grape	nucleus	44.18	44.53
VIT_17s0000g04990.t01	Wine grape	nucleus	43.37	44.44
KRG91419	Soybean	nucleus	40.16	43.48
KRH35403	Soybean	nucleus	39.76	42.67
VIT_10s0003g02070.t01	Wine grape	nucleus	36.95	40.71
VIT_18s0041g01880.t01	Wine grape	nucleus	34.54	38.56
VIT_00s0211g00180.t01	Wine grape	nucleus	32.93	36.61
VIT_18s0001g07900.t01	Wine grape	nucleus	32.93	34.17
VIT_17s0000g01230.t01	Wine grape	nucleus	31.33	33.19
VIT_12s0142g00360.t01	Wine grape	nucleus	35.74	32.48

Protein Annotations

EntrezGene:100256085	wikigene:100256085	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CBI24468	ProteinID:CBI24468.3
ncoils:Coil	UniProt:D7T1T8	EMBL:FN595506	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	EntrezGene:LOC100256085	wikigene:LOC100256085	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF146	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0001984FC4	ArrayExpress:VIT_16s0022g02330	EnsemblPlantsGene:VIT_16s0022g02330	EnsemblPlants:VIT_16s0022g02330.t01	unigene:Vvi.5493	RefSeq:XP_002263143
RefSeq:XP_002263143.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:+:14940190..14955349

Molecular Weight (calculated)

28416.2 Da

IEP (calculated)

8.216

GRAVY (calculated)

-0.684

Length

249 amino acids

Sequence
(BLAST)

001: MGRGRVVLQR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVCLIIFSS RGKLFEFGSS GMTKTIERYR RCCYASRDNN DAEHDRQIGH EEYSKLKAKY
101: ESLMDSQRHL LGEDLGLLSI KELQNLEKML EGTLSQARQR KAQMMLKQMD ELKKKEHDLE EMNKQLTSKL EELEECVRVI EASWDSGTVA GNDSLNMHIS
201: QPNQIQPQPQ PQPQPSLPMG FHEFVPPEGA AIARNVGNAR NGLAQGWLV

Best Arabidopsis Sequence Match ( AT2G45650.1 )
(BLAST)

001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL

Arabidopsis Description

AGL6AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.