Factsheet for VIT_10s0003g02070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00180.t01
VIT_01s0010g03900.t01
VIT_02s0025g04650.t01
VIT_10s0003g02070.t01
VIT_14s0083g01050.t01
VIT_15s0048g01270.t01
VIT_17s0000g04990.t01
VIT_18s0001g07460.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	VIT_01s0010g03900.t01	AT1G24260.2	9418042
AT4G18960.1	VIT_15s0048g01270.t01	AT2G45650.1	9418042
AT4G18960.1	VIT_14s0083g01050.t01	AT3G02310.1	15604664
AT4G18960.1	VIT_14s0083g01050.t01	AT3G02310.1	15805477
AT4G18960.1	VIT_14s0083g01050.t01	AT3G02310.1	9418042
AT4G18960.1	VIT_15s0048g01270.t01	AT3G61120.1	15805477
AT4G18960.1	VIT_02s0025g04650.t01	AT4G11880.1	15805477
AT4G18960.1	VIT_10s0003g02070.t01	AT4G18960.1	14555696
AT4G18960.1	VIT_18s0001g07460.t01	AT4G24540.1	15805477
AT4G18960.1	VIT_00s0211g00180.t01	AT4G37940.1	15805477
AT4G18960.1	VIT_17s0000g04990.t01	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21150	Soybean	nucleus	81.42	75.72
PGSC0003DMT400073134	Potato	nucleus	81.86	74.6
Solyc02g071730.2.1	Tomato	nucleus	79.2	72.18
AT4G18960.1	Thale cress	nucleus	78.32	70.24
CDY09267	Canola	nucleus	76.55	69.48
Bra013364.1-P	Field mustard	nucleus	76.99	69.05
CDX78909	Canola	nucleus	76.99	69.05
KRH42930	Soybean	nucleus	73.45	68.31
GSMUA_Achr10P...	Banana	nucleus	68.14	67.25
Bra012564.1-P	Field mustard	nucleus	74.34	66.93
CDX98597	Canola	nucleus	74.34	66.93
GSMUA_Achr5P06590_001	Banana	nucleus	51.77	66.86
VIT_18s0041g01880.t01	Wine grape	nucleus	65.93	66.82
KRH59043	Soybean	nucleus	71.68	66.67
VIT_12s0142g00360.t01	Wine grape	nucleus	79.2	65.33
VIT_14s0068g01800.t01	Wine grape	nucleus	17.7	62.5
GSMUA_Achr6P14760_001	Banana	nucleus	68.14	60.63
EES00105	Sorghum	nucleus	68.58	57.62
TraesCS3D01G140200.2	Wheat	nucleus	69.03	56.93
Zm00001d039434_P001	Maize	nucleus	65.93	56.87
TraesCS3A01G314300.1	Wheat	nucleus	68.14	56.41
TraesCS1D01G262700.1	Wheat	nucleus	62.39	56.4
HORVU3Hr1G026650.1	Barley	nucleus	67.26	56.09
CDX99406	Canola	nucleus	76.99	55.77
Os01t0201700-02	Rice	nucleus	67.26	55.07
TraesCS1B01G273300.1	Wheat	nucleus	61.95	54.9
TraesCS5B01G115100.1	Wheat	nucleus	60.18	53.97
Os01t0886200-01	Rice	nucleus	63.27	53.96
HORVU1Hr1G023620.1	Barley	nucleus	59.73	53.57
TraesCS1B01G144800.1	Wheat	nucleus	63.27	53.16
Zm00001d042591_P002	Maize	nucleus	62.83	52.99
TraesCS1D01G127700.1	Wheat	nucleus	62.83	52.79
TraesCS5D01G118200.1	Wheat	nucleus	58.85	52.78
TraesCS5A01G117500.1	Wheat	nucleus	59.29	52.76
EES01878	Sorghum	nucleus	64.6	52.71
TraesCS1A01G125800.1	Wheat	nucleus	62.39	52.42
Os05t0203800-02	Rice	nucleus	62.83	52.21
Zm00001d023955_P003	Maize	nucleus	61.06	52.08
Os12t0207000-01	Rice	nucleus	61.5	51.48
EES15827	Sorghum	nucleus	60.62	50.93
TraesCS1A01G262700.1	Wheat	endoplasmic reticulum	61.95	50.91
GSMUA_Achr10P...	Banana	nucleus	71.68	50.78
TraesCS3B01G157500.4	Wheat	nucleus	68.58	50.0
Zm00001d041781_P001	Maize	nucleus	60.62	47.74
OQU77603	Sorghum	nucleus	61.06	47.26
Zm00001d037737_P001	Maize	nucleus	59.73	44.12
HORVU1Hr1G029220.1	Barley	nucleus	63.27	43.87
Zm00001d008882_P001	Maize	nucleus	61.06	41.95
VIT_01s0010g03900.t01	Wine grape	nucleus	40.27	41.18
VIT_15s0048g01270.t01	Wine grape	nucleus	42.48	39.34
VIT_14s0083g01050.t01	Wine grape	nucleus	41.59	38.68
VIT_17s0000g05000.t01	Wine grape	nucleus	42.04	38.62
VIT_01s0011g00110.t01	Wine grape	nucleus	41.15	38.27
VIT_01s0011g00100.t01	Wine grape	nucleus	39.82	37.34
VIT_18s0001g07900.t01	Wine grape	nucleus	39.38	37.08
VIT_16s0022g02330.t01	Wine grape	nucleus	40.71	36.95
VIT_00s0211g00180.t01	Wine grape	nucleus	35.84	36.16
VIT_17s0000g04990.t01	Wine grape	nucleus	38.05	35.39
VIT_17s0000g01230.t01	Wine grape	nucleus	36.28	34.89
VIT_14s0083g01030.t01	Wine grape	nucleus	37.61	34.41

Protein Annotations

EntrezGene:100261787	wikigene:100261787	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:ACZ26525	ProteinID:ACZ26525.1
EntrezGene:AG	wikigene:AG	EMBL:AM478968	ProteinID:CAN83827	ProteinID:CAN83827.1	ProteinID:CBI30760
ProteinID:CBI30760.3	ncoils:Coil	UniProt:D7TJT8	EMBL:FN595992	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
EMBL:GU133631	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF187	SMART:SM00432	SUPFAM:SSF55455	TIGR:TC62522	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0001983F94	ArrayExpress:VIT_10s0003g02070	EnsemblPlantsGene:VIT_10s0003g02070	EnsemblPlants:VIT_10s0003g02070.t01	:

Description

No Description!

Coordinates

chr10:+:3730392..3738386

Molecular Weight (calculated)

26196.0 Da

IEP (calculated)

9.860

GRAVY (calculated)

-0.856

Length

226 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN SVKSTIERYK KASADSSNTG SVSEANAQFY QQESSKLHQQ
101: IRNLQNSNRH MLGESLGSLN FKDLKSLEIR LEKGISRIRS RKNELLFAEI EYMQKREIDL HNDNQYLRAR IAENERNEQQ MSLMPGGANY ELMPSQQFDS
201: RNYFQLNGLQ PNQSYSRQDQ PALQLV

Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)

001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV

Arabidopsis Description

AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.