Factsheet for VIT_18s0001g07460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00180.t01
VIT_01s0011g00100.t01
VIT_02s0025g04650.t01
VIT_04s0023g03190.t01
VIT_10s0003g02070.t01
VIT_15s0048g01270.t01
VIT_17s0000g04990.t01
VIT_18s0001g07460.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24540.1	VIT_01s0011g00100.t01	AT1G26310.1	11439126
AT4G24540.1	VIT_04s0023g03190.t01	AT2G18040.1	20129060
AT4G24540.1	VIT_15s0048g01270.t01	AT2G45650.1	15805477
AT4G24540.1	VIT_02s0025g04650.t01	AT4G11880.1	15805477
AT4G24540.1	VIT_10s0003g02070.t01	AT4G18960.1	15805477
AT4G24540.1	VIT_18s0001g07460.t01	AT4G24540.1	15805477
AT4G24540.1	VIT_00s0211g00180.t01	AT4G37940.1	15805477
AT4G24540.1	VIT_17s0000g04990.t01	AT5G60910.1	15805477
AT4G24540.1	VIT_17s0000g04990.t01	AT5G60910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62216	Soybean	nucleus	16.56	80.3
VIT_03s0017g00360.t01	Wine grape	nucleus	15.0	76.19
VIT_03s0167g00100.t01	Wine grape	nucleus	14.38	75.41
VIT_00s0729g00010.t01	Wine grape	nucleus	14.38	74.19
VIT_15s0024g01860.t01	Wine grape	nucleus	14.69	72.31
VIT_00s0313g00070.t01	Wine grape	nucleus	49.06	69.16
VIT_03s0017g00440.t01	Wine grape	nucleus	19.69	67.02
Zm00001d044899_P001	Maize	nucleus	13.44	60.56
AT4G24540.1	Thale cress	nucleus	41.25	60.0
VIT_03s0017g00450.t01	Wine grape	nucleus	14.06	60.0
CDY03445	Canola	nucleus	40.94	59.28
Bra019221.1-P	Field mustard	nucleus	39.69	58.8
CDY11019	Canola	nucleus	39.69	58.8
GSMUA_Achr10P...	Banana	nucleus	41.88	58.77
PGSC0003DMT400024247	Potato	nucleus	43.12	58.72
KRH52935	Soybean	nucleus	41.88	57.27
VIT_15s0024g02000.t01	Wine grape	nucleus	15.31	56.98
VIT_15s0107g00120.t01	Wine grape	nucleus	31.56	56.11
CDX92641	Canola	nucleus	39.38	55.02
GSMUA_Achr3P06800_001	Banana	nucleus	38.75	54.15
Os06t0217300-01	Rice	nucleus	37.5	53.81
Zm00001d018142_P001	Maize	nucleus	36.88	53.39
Os02t0761000-01	Rice	nucleus	37.5	52.63
Zm00001d052180_P001	Maize	nucleus	36.25	52.49
KXG31156	Sorghum	nucleus	36.56	51.32
TraesCS6B01G343900.1	Wheat	cytosol	36.25	50.88
TraesCS6D01G293200.1	Wheat	nucleus	36.25	50.88
TraesCS6A01G313800.1	Wheat	nucleus	36.25	50.88
TraesCS4D01G301100.1	Wheat	nucleus	35.62	50.44
VIT_03s0167g00070.t01	Wine grape	nucleus	28.75	50.27
Solyc04g076280.2.1	Tomato	vacuole	30.31	49.74
TraesCS4B01G302600.2	Wheat	nucleus	35.31	49.56
HORVU6Hr1G077300.8	Barley	nucleus	35.31	49.13
TraesCS7D01G176700.1	Wheat	nucleus	34.06	48.23
HORVU4Hr1G077850.13	Barley	nucleus	35.0	47.86
EER88077	Sorghum	nucleus	33.44	47.56
KXG40019	Sorghum	nucleus	34.06	46.98
Os03t0186600-01	Rice	nucleus	35.94	46.37
TraesCS4A01G002600.1	Wheat	nucleus	23.44	46.01
GSMUA_Achr9P15180_001	Banana	nucleus	42.19	45.92
TraesCS7A01G175200.2	Wheat	nucleus	33.44	44.58
Zm00001d027957_P001	Maize	nucleus	34.69	43.87
TraesCS7B01G080300.2	Wheat	cytosol	32.81	43.57
Zm00001d027955_P001	Maize	extracellular, golgi	18.12	32.22
HORVU7Hr1G036130.10	Barley	nucleus, plastid	21.25	28.33

Protein Annotations

EntrezGene:100260900	wikigene:100260900	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:AM465018	ProteinID:CAN68106
ProteinID:CAN68106.1	ProteinID:CCB45651	ProteinID:CCB45651.1	ncoils:Coil	UniProt:F6H129	EMBL:FN595227
GO:GO:0000003	GO:GO:0000060	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006810
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009719	GO:GO:0009739	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010077
GO:GO:0010220	GO:GO:0043565	GO:GO:0045893	GO:GO:0045944	GO:GO:0046982	GO:GO:0046983
GO:GO:0048438	GO:GO:0048510	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	EntrezGene:LOC100260900
wikigene:LOC100260900	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF179	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002108CA1	ArrayExpress:VIT_18s0001g07460	EnsemblPlantsGene:VIT_18s0001g07460
EnsemblPlants:VIT_18s0001g07460.t01	RefSeq:XP_002285687	RefSeq:XP_002285687.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:+:5693334..5711315

Molecular Weight (calculated)

35724.0 Da

IEP (calculated)

8.661

GRAVY (calculated)

-0.512

Length

320 amino acids

Sequence
(BLAST)

001: MEILGEVRRE DGGILQLGSR VCRGERGVYR CRGACNDAAG KRQLYNDGWR EVLQGFQAIG VSCPDVGVAA SWGGWATTTA IQTEKRFGSG GVRRMAREKI
101: KIRKIDNVSA RQVTFSKRRR GLFKKAEELS VLCDAEVALI IFSSTGKLFD YSSSSMKDIL GRYTMHSNNL EKLEGPSLEL QLENSNHVRL SKEIADKSHQ
201: LRQMRGEDIQ GLNIEELLKL EKMLEAGLSR VLKSKSDRIM TEIATLQTKG AQLMEENNKL RQKMEIICKG KRLMTMESDN MILEEGQSSE SITNVYSCSS
301: GPPQEDDSSD TSLKLGLPFS

Best Arabidopsis Sequence Match ( AT2G22540.3 )
(BLAST)

001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG

Arabidopsis Description

SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.