Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH69674 | Soybean | nucleus | 79.3 | 79.3 |
| KRH74496 | Soybean | nucleus | 79.3 | 79.3 |
| VIT_03s0017g00360.t01 | Wine grape | nucleus | 21.59 | 77.78 |
| VIT_03s0167g00100.t01 | Wine grape | nucleus | 20.7 | 77.05 |
| VIT_00s0729g00010.t01 | Wine grape | nucleus | 20.7 | 75.81 |
| VIT_15s0024g01860.t01 | Wine grape | nucleus | 20.26 | 70.77 |
| VIT_03s0017g00440.t01 | Wine grape | nucleus | 28.63 | 69.15 |
| Zm00001d044899_P001 | Maize | nucleus | 19.82 | 63.38 |
| GSMUA_Achr10P... | Banana | nucleus | 63.44 | 63.16 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 63.44 | 62.88 |
| VIT_03s0017g00450.t01 | Wine grape | nucleus | 20.7 | 62.67 |
| Zm00001d018142_P001 | Maize | nucleus | 58.15 | 59.73 |
| VIT_15s0024g02000.t01 | Wine grape | nucleus | 22.47 | 59.3 |
| Zm00001d052180_P001 | Maize | nucleus | 57.27 | 58.82 |
| Os02t0761000-01 | Rice | nucleus | 58.15 | 57.89 |
| KXG31156 | Sorghum | nucleus | 57.27 | 57.02 |
| VIT_15s0107g00120.t01 | Wine grape | nucleus | 44.93 | 56.67 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 56.39 | 56.14 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 56.39 | 56.14 |
| Os06t0217300-01 | Rice | nucleus | 55.07 | 56.05 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 55.95 | 55.7 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 54.63 | 53.91 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 51.1 | 51.33 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 50.66 | 50.88 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 50.22 | 50.0 |
| EER88077 | Sorghum | nucleus | 48.9 | 49.33 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 69.16 | 49.06 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 51.54 | 48.75 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 63.0 | 48.64 |
| VIT_03s0167g00070.t01 | Wine grape | nucleus | 38.77 | 48.09 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 49.34 | 47.86 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 34.36 | 47.85 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 50.66 | 47.72 |
| KXG40019 | Sorghum | nucleus | 48.46 | 47.41 |
| Os03t0186600-01 | Rice | nucleus | 51.54 | 47.18 |
| Zm00001d027957_P001 | Maize | nucleus | 49.78 | 44.66 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 28.19 | 35.56 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 32.16 | 30.42 |
Protein Annotations
| EntrezGene:100251508 | wikigene:100251508 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:AFC96914 | ProteinID:AFC96914.1 |
| ProteinID:CBI38273 | ProteinID:CBI38273.3 | ncoils:Coil | UniProt:D7U6A4 | EMBL:FN596518 | GO:GO:0000003 |
| GO:GO:0000900 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006412 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009266 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009910 | GO:GO:0009987 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0043565 | GO:GO:0045182 |
| GO:GO:0045892 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048438 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | EMBL:JQ387569 | EntrezGene:LOC100251508 | wikigene:LOC100251508 | InterPro:MADS_MEF2-like | PFAM:PF00319 |
| PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF179 | SMART:SM00432 | SUPFAM:SSF55455 | TIGR:TC66128 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000198604A | ArrayExpress:VIT_00s0313g00070 | EnsemblPlantsGene:VIT_00s0313g00070 | EnsemblPlants:VIT_00s0313g00070.t01 | unigene:Vvi.824 |
| RefSeq:XP_002269295 | RefSeq:XP_002269295.1 | RefSeq:XP_019073897.1 | RefSeq:XP_019073898.1 | SEG:seg | : |
Description
No Description!
Coordinates
chrUn:-:22834429..22842295
Molecular Weight (calculated)
25777.6 Da
IEP (calculated)
6.970
GRAVY (calculated)
-0.796
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFSSS SMKEILEKHS LQSKNLEKLE QPSLELQLVE NNNHSRLSKE
101: VADKSHKLRQ MRGEELQGLN IEDLQQLEKS LEAGLSRVIQ KKGERIMKEI TDLQSKGVQL MEENERLRQQ VVEISNRRRQ VAGDSENMFH EEGQSSESVT
201: NVSNSNGPPQ DYESSDTSLK LGLPYSG
101: VADKSHKLRQ MRGEELQGLN IEDLQQLEKS LEAGLSRVIQ KKGERIMKEI TDLQSKGVQL MEENERLRQQ VVEISNRRRQ VAGDSENMFH EEGQSSESVT
201: NVSNSNGPPQ DYESSDTSLK LGLPYSG
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.