CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69674	Soybean	nucleus	96.92	96.92
VIT_00s0313g00070.t01	Wine grape	nucleus	79.3	79.3
KRH62216	Soybean	nucleus	22.91	78.79
Zm00001d044899_P001	Maize	nucleus	19.82	63.38
GSMUA_Achr10P...	Banana	nucleus	59.47	59.21
GSMUA_Achr3P06800_001	Banana	nucleus	58.59	58.08
Zm00001d018142_P001	Maize	nucleus	54.63	56.11
KRH42097	Soybean	nucleus	50.22	55.61
Os02t0761000-01	Rice	nucleus	55.07	54.82
Zm00001d052180_P001	Maize	nucleus	53.3	54.75
KXG31156	Sorghum	nucleus	54.19	53.95
TraesCS6B01G343900.1	Wheat	cytosol	53.74	53.51
TraesCS6A01G313800.1	Wheat	nucleus	53.74	53.51
Os06t0217300-01	Rice	nucleus	52.42	53.36
TraesCS6D01G293200.1	Wheat	nucleus	53.3	53.07
KRH49819	Soybean	nucleus	47.58	52.43
KRH52935	Soybean	nucleus	53.3	51.71
HORVU6Hr1G077300.8	Barley	nucleus	51.54	50.87
KRH21764	Soybean	nucleus	45.37	50.0
TraesCS7D01G176700.1	Wheat	nucleus	49.78	50.0
KRH10603	Soybean	nucleus	45.81	50.0
TraesCS4D01G301100.1	Wheat	nucleus	48.46	48.67
TraesCS4B01G302600.2	Wheat	nucleus	48.02	47.81
TraesCS7A01G175200.2	Wheat	nucleus	50.22	47.5
EER88077	Sorghum	nucleus	46.7	47.11
Os03t0186600-01	Rice	nucleus	51.1	46.77
HORVU4Hr1G077850.13	Barley	nucleus	48.02	46.58
KXG40019	Sorghum	nucleus	47.58	46.55
GSMUA_Achr9P15180_001	Banana	nucleus	59.91	46.26
TraesCS7B01G080300.2	Wheat	cytosol	48.9	46.06
TraesCS4A01G002600.1	Wheat	nucleus	32.6	45.4
KRH10606	Soybean	nucleus	41.41	44.55
Zm00001d027957_P001	Maize	nucleus	48.9	43.87
KRH21757	Soybean	nucleus	41.41	37.9
Zm00001d027955_P001	Maize	extracellular, golgi	25.99	32.78
HORVU7Hr1G036130.10	Barley	nucleus, plastid	30.4	28.75

Protein Annotations

EntrezGene:100808695	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02000037	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G023500
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	UniProt:I1J514	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
EnsemblPlants:KRH74496	ProteinID:KRH74496	ProteinID:KRH74496.1	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF179
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00023373F6

Description

hypothetical protein

Coordinates

chr1:-:2367540..2372762

Molecular Weight (calculated)

25613.7 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.593

Length

227 amino acids

Sequence
(BLAST)

001: MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEYSSS SMKEILERHH LHSKNLARME QPSLELQLVE NSNCSRLSKE
101: VAEKSHQLRQ LRGEDLQGLN IEELQQLEMS LETGLGRIIE KKGEKIMSEI ADLQRKGMLL MEENERLKRH VAGIINGQRH GGAESENFVM DEGQSSESVT
201: YVCNSTGLPQ DYESSDTSLK LGLPYSG

Best Arabidopsis Sequence Match ( AT2G22540.3 )
(BLAST)

001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG

Arabidopsis Description

SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.