CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74496	Soybean	nucleus	96.92	96.92
VIT_00s0313g00070.t01	Wine grape	nucleus	79.3	79.3
KRH62216	Soybean	nucleus	22.47	77.27
Zm00001d044899_P001	Maize	nucleus	18.94	60.56
GSMUA_Achr10P...	Banana	nucleus	59.03	58.77
GSMUA_Achr3P06800_001	Banana	nucleus	59.03	58.52
Zm00001d018142_P001	Maize	nucleus	54.19	55.66
KRH42097	Soybean	nucleus	50.22	55.61
Os02t0761000-01	Rice	nucleus	54.63	54.39
Zm00001d052180_P001	Maize	nucleus	52.86	54.3
KXG31156	Sorghum	nucleus	53.74	53.51
TraesCS6B01G343900.1	Wheat	cytosol	53.3	53.07
TraesCS6A01G313800.1	Wheat	nucleus	53.3	53.07
Os06t0217300-01	Rice	nucleus	51.98	52.91
TraesCS6D01G293200.1	Wheat	nucleus	52.86	52.63
KRH49819	Soybean	nucleus	47.58	52.43
KRH52935	Soybean	nucleus	53.74	52.14
HORVU6Hr1G077300.8	Barley	nucleus	51.1	50.43
TraesCS7D01G176700.1	Wheat	nucleus	49.34	49.56
KRH10603	Soybean	nucleus	44.93	49.04
KRH21764	Soybean	nucleus	44.49	49.03
TraesCS4D01G301100.1	Wheat	nucleus	48.02	48.23
TraesCS4B01G302600.2	Wheat	nucleus	47.58	47.37
TraesCS7A01G175200.2	Wheat	nucleus	49.78	47.08
Os03t0186600-01	Rice	nucleus	51.1	46.77
EER88077	Sorghum	nucleus	46.26	46.67
GSMUA_Achr9P15180_001	Banana	nucleus	60.35	46.6
KXG40019	Sorghum	nucleus	47.58	46.55
HORVU4Hr1G077850.13	Barley	nucleus	47.58	46.15
TraesCS7B01G080300.2	Wheat	cytosol	48.46	45.64
TraesCS4A01G002600.1	Wheat	nucleus	32.6	45.4
KRH10606	Soybean	nucleus	41.85	45.02
Zm00001d027957_P001	Maize	nucleus	48.9	43.87
KRH21757	Soybean	nucleus	41.85	38.31
Zm00001d027955_P001	Maize	extracellular, golgi	26.43	33.33
HORVU7Hr1G036130.10	Barley	nucleus, plastid	30.84	29.17

Protein Annotations

EntrezGene:100789126	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02000727	ncoils:Coil	UniProt:E3NYP9
EMBL:EU256477	EnsemblPlantsGene:GLYMA_02G041500	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	EnsemblPlants:KRH69674	ProteinID:KRH69674	ProteinID:KRH69674.1	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF179
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001E78C2A

Description

hypothetical protein

Coordinates

chr2:+:3902050..3908485

Molecular Weight (calculated)

25668.7 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.637

Length

227 amino acids

Sequence
(BLAST)

001: MVREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVMCD ADVALIIFSS TGKLFEYSSS SMKEILERHH LHSKNLARME QPSLELQLVE NSNCSRLSKE
101: VAEKSHQLRQ LRGEDLQGLN IEELQQLERS LETGLGRVIE KKGEKIMSEI TDLQRKGMLL MEENERLKRH VAGIINGQRH GGAESENFVM DEGQSSESVT
201: YVCNSTGPPQ DFESSDTSLK LGLPYSG

Best Arabidopsis Sequence Match ( AT2G22540.3 )
(BLAST)

001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG

Arabidopsis Description

SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.