CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21757	Soybean	nucleus	86.73	73.79
VIT_03s0167g00100.t01	Wine grape	nucleus	20.85	72.13
VIT_03s0017g00360.t01	Wine grape	nucleus	21.33	71.43
VIT_00s0729g00010.t01	Wine grape	nucleus	20.85	70.97
KRH62216	Soybean	nucleus	21.33	68.18
VIT_15s0024g01860.t01	Wine grape	nucleus	20.85	67.69
VIT_03s0017g00440.t01	Wine grape	nucleus	26.54	59.57
VIT_03s0017g00450.t01	Wine grape	nucleus	20.85	58.67
VIT_15s0024g02000.t01	Wine grape	nucleus	21.8	53.49
Zm00001d044899_P001	Maize	nucleus	17.06	50.7
KRH49819	Soybean	nucleus	48.82	50.0
KRH42097	Soybean	nucleus	47.87	49.27
KRH21764	Soybean	nucleus	47.39	48.54
KRH10603	Soybean	nucleus	46.92	47.6
VIT_15s0107g00120.t01	Wine grape	nucleus	39.34	46.11
PGSC0003DMT400083739	Potato	nucleus	44.55	42.53
KRH69674	Soybean	nucleus	45.02	41.85
KRH74496	Soybean	nucleus	44.55	41.41
KRH52935	Soybean	nucleus	42.65	38.46
GSMUA_Achr3P06800_001	Banana	nucleus	41.23	37.99
GSMUA_Achr10P...	Banana	nucleus	39.81	36.84
Zm00001d052180_P001	Maize	nucleus	37.44	35.75
Zm00001d018142_P001	Maize	nucleus	36.49	34.84
Solyc01g105800.2.1	Tomato	nucleus	45.5	34.41
TraesCS6A01G313800.1	Wheat	nucleus	36.97	34.21
TraesCS6B01G343900.1	Wheat	cytosol	36.97	34.21
TraesCS6D01G293200.1	Wheat	nucleus	36.97	34.21
Os02t0761000-01	Rice	nucleus	36.97	34.21
KXG31156	Sorghum	nucleus	36.49	33.77
Os06t0217300-01	Rice	nucleus	35.55	33.63
EER88077	Sorghum	nucleus	35.55	33.33
TraesCS7D01G176700.1	Wheat	nucleus	35.55	33.19
HORVU6Hr1G077300.8	Barley	nucleus	35.55	32.61
KXG40019	Sorghum	nucleus	35.55	32.33
TraesCS4D01G301100.1	Wheat	nucleus	34.6	32.3
TraesCS4B01G302600.2	Wheat	nucleus	34.6	32.02
HORVU4Hr1G077850.13	Barley	nucleus	35.07	31.62
VIT_03s0167g00070.t01	Wine grape	nucleus	27.01	31.15
TraesCS7B01G080300.2	Wheat	cytosol	35.07	30.71
TraesCS7A01G175200.2	Wheat	nucleus	34.6	30.42
Os03t0186600-01	Rice	nucleus	35.55	30.24
GSMUA_Achr9P15180_001	Banana	nucleus	41.71	29.93
Zm00001d027957_P001	Maize	nucleus	34.6	28.85
TraesCS4A01G002600.1	Wheat	nucleus	19.91	25.77
HORVU7Hr1G036130.10	Barley	nucleus, plastid	22.75	20.0
Zm00001d027955_P001	Maize	extracellular, golgi	17.06	20.0

Protein Annotations

EntrezGene:100779995	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02009149	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G058000
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:K7M9U6
EnsemblPlants:KRH10606	ProteinID:KRH10606	ProteinID:KRH10606.1	ProteinID:KRH10607.1	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF179	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0001E249DD	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:4483540..4493999

Molecular Weight (calculated)

24589.8 Da

IEP (calculated)

10.176

GRAVY (calculated)

-0.672

Length

211 amino acids

Sequence
(BLAST)

001: MVRRKIPIKK IDNVTARQVT FSKRKSGLFK KARELSLLCD SEIALIVFSP GGKLFDYASS SMQKVIERHI LWSELNLEKL DQSCPTEQLR CNYADLNKEF
101: GDRIREMRQL NGEELQGLAL RELQKLEERL VSSLNRVYKA KVENFTREID ILKQKGNKLM EDNRLMKQRI KPRNEICSVQ RHEHEQGRSF DTSLTLGLSF
201: PAGSKYRVSE Q

Best Arabidopsis Sequence Match ( AT2G22540.1 )
(BLAST)

001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG

Arabidopsis Description

SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.