Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0017g00360.t01 | Wine grape | nucleus | 93.44 | 90.48 |
| VIT_00s0729g00010.t01 | Wine grape | nucleus | 88.52 | 87.1 |
| VIT_15s0024g01860.t01 | Wine grape | nucleus | 86.89 | 81.54 |
| VIT_03s0017g00450.t01 | Wine grape | nucleus | 90.16 | 73.33 |
| VIT_15s0024g02000.t01 | Wine grape | nucleus | 88.52 | 62.79 |
| VIT_03s0017g00440.t01 | Wine grape | nucleus | 90.16 | 58.51 |
| Zm00001d044899_P001 | Maize | nucleus | 59.02 | 50.7 |
| VIT_15s0107g00120.t01 | Wine grape | nucleus | 91.8 | 31.11 |
| PGSC0003DMT400083739 | Potato | nucleus | 86.89 | 23.98 |
| KRH10603 | Soybean | nucleus | 80.33 | 23.56 |
| KRH21764 | Soybean | nucleus | 77.05 | 22.82 |
| KRH42097 | Soybean | nucleus | 75.41 | 22.44 |
| KRH49819 | Soybean | nucleus | 75.41 | 22.33 |
| GSMUA_Achr10P... | Banana | nucleus | 78.69 | 21.05 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 78.69 | 20.96 |
| KRH10606 | Soybean | nucleus | 72.13 | 20.85 |
| VIT_00s0313g00070.t01 | Wine grape | nucleus | 77.05 | 20.7 |
| Solyc01g105800.2.1 | Tomato | nucleus | 86.89 | 19.0 |
| Zm00001d018142_P001 | Maize | nucleus | 65.57 | 18.1 |
| Zm00001d052180_P001 | Maize | nucleus | 65.57 | 18.1 |
| KRH21757 | Soybean | nucleus | 72.13 | 17.74 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 65.57 | 17.54 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 65.57 | 17.54 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 65.57 | 17.54 |
| Os02t0761000-01 | Rice | nucleus | 65.57 | 17.54 |
| KXG31156 | Sorghum | nucleus | 65.57 | 17.54 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 65.57 | 17.39 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 80.33 | 16.67 |
| Os06t0217300-01 | Rice | nucleus | 60.66 | 16.59 |
| EER88077 | Sorghum | nucleus | 60.66 | 16.44 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 60.66 | 16.37 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 57.38 | 15.49 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 60.66 | 15.42 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 60.66 | 15.35 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 57.38 | 15.35 |
| KXG40019 | Sorghum | nucleus | 57.38 | 15.09 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 57.38 | 14.96 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 75.41 | 14.38 |
| Zm00001d027957_P001 | Maize | nucleus | 59.02 | 14.23 |
| Os03t0186600-01 | Rice | nucleus | 57.38 | 14.11 |
| VIT_03s0167g00070.t01 | Wine grape | nucleus | 13.11 | 4.37 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 14.75 | 3.75 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 8.2 | 2.78 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:100252160 | wikigene:100252160 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:CCB59000 | ProteinID:CCB59000.1 |
| UniProt:F6HWD6 | EMBL:FN596268 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | EntrezGene:LOC100252160 | wikigene:LOC100252160 | PFAM:PF00319 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF277 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002109C6F | ArrayExpress:VIT_03s0167g00100 | EnsemblPlantsGene:VIT_03s0167g00100 |
| EnsemblPlants:VIT_03s0167g00100.t01 | RefSeq:XP_002262893 | RefSeq:XP_002262893.2 | : | : | : |
Description
No Description!
Coordinates
chr3:-:12286339..12294983
Molecular Weight (calculated)
6990.6 Da
IEP (calculated)
10.921
GRAVY (calculated)
-0.325
Length
61 amino acids
Sequence
(BLAST)
(BLAST)
1: MPRQKIQIKK IDNTAARQVT FSKRRRGLFK KALELSTLCD AEIELIVFSA AGKLFEYSSS R
001: MAREKIRIKK IDNITARQVT FSKRRRGIFK KADELSVLCD ADVALIIFSA TGKLFEFSSS RMRDILGRYS LHASNINKLM DPPSTHLRLE NCNLSRLSKE
101: VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS
201: GTPLEDDSDT SLKLGLPSWE
101: VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS
201: GTPLEDDSDT SLKLGLPSWE
Arabidopsis Description
AGL24MADS-box protein AGL24 [Source:UniProtKB/Swiss-Prot;Acc:O82794]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.