Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0017g00360.t01 | Wine grape | nucleus | 60.64 | 90.48 |
| VIT_03s0167g00100.t01 | Wine grape | nucleus | 58.51 | 90.16 |
| VIT_00s0729g00010.t01 | Wine grape | nucleus | 57.45 | 87.1 |
| VIT_15s0024g01860.t01 | Wine grape | nucleus | 56.38 | 81.54 |
| VIT_03s0017g00450.t01 | Wine grape | nucleus | 63.83 | 80.0 |
| VIT_15s0024g02000.t01 | Wine grape | nucleus | 57.45 | 62.79 |
| Zm00001d044899_P001 | Maize | nucleus | 37.23 | 49.3 |
| VIT_15s0107g00120.t01 | Wine grape | nucleus | 81.91 | 42.78 |
| KRH10603 | Soybean | nucleus | 68.09 | 30.77 |
| KRH21764 | Soybean | nucleus | 64.89 | 29.61 |
| PGSC0003DMT400083739 | Potato | nucleus | 69.15 | 29.41 |
| KRH42097 | Soybean | nucleus | 63.83 | 29.27 |
| KRH49819 | Soybean | nucleus | 62.77 | 28.64 |
| VIT_00s0313g00070.t01 | Wine grape | nucleus | 69.15 | 28.63 |
| GSMUA_Achr10P... | Banana | nucleus | 69.15 | 28.51 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 67.02 | 27.51 |
| KRH10606 | Soybean | nucleus | 59.57 | 26.54 |
| Zm00001d018142_P001 | Maize | nucleus | 60.64 | 25.79 |
| Zm00001d052180_P001 | Maize | nucleus | 59.57 | 25.34 |
| Os02t0761000-01 | Rice | nucleus | 60.64 | 25.0 |
| KXG31156 | Sorghum | nucleus | 59.57 | 24.56 |
| Os06t0217300-01 | Rice | nucleus | 57.45 | 24.22 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 58.51 | 24.12 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 58.51 | 24.12 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 58.51 | 24.12 |
| EER88077 | Sorghum | nucleus | 57.45 | 24.0 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 58.51 | 23.91 |
| Solyc01g105800.2.1 | Tomato | nucleus | 70.21 | 23.66 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 55.32 | 23.01 |
| KRH21757 | Soybean | nucleus | 59.57 | 22.58 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 68.09 | 21.77 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 55.32 | 21.67 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 55.32 | 21.58 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 51.06 | 21.24 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 51.06 | 21.05 |
| KXG40019 | Sorghum | nucleus | 51.06 | 20.69 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 51.06 | 20.51 |
| Zm00001d027957_P001 | Maize | nucleus | 53.19 | 19.76 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 67.02 | 19.69 |
| Os03t0186600-01 | Rice | nucleus | 51.06 | 19.35 |
| VIT_03s0167g00070.t01 | Wine grape | nucleus | 36.17 | 18.58 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 23.4 | 12.22 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 25.53 | 10.0 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 15.96 | 9.2 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:CCB57983 | ProteinID:CCB57983.1 | UniProt:F6HTH3 | EMBL:FN596248 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF277 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00021088AE | ArrayExpress:VIT_03s0017g00440 |
| EnsemblPlantsGene:VIT_03s0017g00440 | EnsemblPlants:VIT_03s0017g00440.t01 | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:14881928..14892856
Molecular Weight (calculated)
10617.0 Da
IEP (calculated)
10.040
GRAVY (calculated)
-0.329
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MSRQKIQIKK IDNTAARQVT SSKRRRGLFK KAQELSTLCD AEIAHIVFSA AGKLFEYSSS RKMRGEELQG LKIEELLEAG PCSIVEEKVC FIKL
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.