Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0167g00100.t01 | Wine grape | nucleus | 23.98 | 86.89 |
| VIT_03s0017g00360.t01 | Wine grape | nucleus | 24.43 | 85.71 |
| VIT_00s0729g00010.t01 | Wine grape | nucleus | 23.08 | 82.26 |
| VIT_15s0024g01860.t01 | Wine grape | nucleus | 22.62 | 76.92 |
| Solyc01g105800.2.1 | Tomato | nucleus | 94.57 | 74.91 |
| VIT_03s0017g00450.t01 | Wine grape | nucleus | 23.98 | 70.67 |
| VIT_03s0017g00440.t01 | Wine grape | nucleus | 29.41 | 69.15 |
| VIT_15s0024g02000.t01 | Wine grape | nucleus | 23.53 | 60.47 |
| Zm00001d044899_P001 | Maize | nucleus | 17.19 | 53.52 |
| VIT_15s0107g00120.t01 | Wine grape | nucleus | 42.53 | 52.22 |
| KRH42097 | Soybean | nucleus | 48.42 | 52.2 |
| KRH49819 | Soybean | nucleus | 47.51 | 50.97 |
| KRH10603 | Soybean | nucleus | 47.06 | 50.0 |
| KRH21764 | Soybean | nucleus | 45.7 | 49.03 |
| PGSC0003DMT400041773 | Potato | nucleus | 49.77 | 46.22 |
| GSMUA_Achr10P... | Banana | nucleus | 47.06 | 45.61 |
| Zm00001d052180_P001 | Maize | nucleus | 45.25 | 45.25 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 46.61 | 44.98 |
| Zm00001d018142_P001 | Maize | nucleus | 44.8 | 44.8 |
| KRH10606 | Soybean | nucleus | 42.53 | 44.55 |
| KXG31156 | Sorghum | nucleus | 45.25 | 43.86 |
| Os02t0761000-01 | Rice | nucleus | 44.8 | 43.42 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 43.89 | 42.54 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 43.89 | 42.54 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 43.44 | 42.11 |
| PGSC0003DMT400024247 | Potato | nucleus | 44.34 | 41.7 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 42.53 | 41.59 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 42.99 | 41.3 |
| Os06t0217300-01 | Rice | nucleus | 41.63 | 41.26 |
| KXG40019 | Sorghum | nucleus | 42.53 | 40.52 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 40.72 | 39.82 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 40.27 | 39.04 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 42.08 | 38.75 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 40.72 | 38.46 |
| Zm00001d027957_P001 | Maize | nucleus | 43.89 | 38.34 |
| KRH21757 | Soybean | nucleus | 42.99 | 38.31 |
| EER88077 | Sorghum | nucleus | 38.91 | 38.22 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 48.87 | 36.73 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 39.82 | 36.51 |
| VIT_03s0167g00070.t01 | Wine grape | nucleus | 29.86 | 36.07 |
| Os03t0186600-01 | Rice | nucleus | 40.27 | 35.89 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 24.43 | 33.13 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 23.08 | 28.33 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 26.7 | 24.58 |
Protein Annotations
| EntrezGene:102577664 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:AAB94006 | ProteinID:AAB94006.1 | ProteinID:AAV65496 |
| ProteinID:AAV65496.1 | ProteinID:ACH53556 | ProteinID:ACH53556.1 | EMBL:AF008652 | EMBL:AY643725 | ncoils:Coil |
| EMBL:EU664445 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| UniProt:M1D727 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | EnsemblPlantsGene:PGSC0003DMG400033570 | PGSC:PGSC0003DMG400033570 |
| EnsemblPlants:PGSC0003DMT400083739 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF179 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0002956161 | RefSeq:XP_006351733.1 | SEG:seg | : | : | : |
Description
MADS transcriptional factor [Source:PGSC_GENE;Acc:PGSC0003DMG400033570]
Coordinates
chr1:+:82400439..82408299
Molecular Weight (calculated)
25253.3 Da
IEP (calculated)
9.108
GRAVY (calculated)
-0.748
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRQKIQIKK IDNLTARQVT FSKRRRGLFK KAQELSTLCD ADIGLIVFSA TGKLFEYSSS SMMQLIEKHK MQSERDSMDN PEQLHSSNLL SEKKTHAMLS
101: RDFVEKNREL RQLHGEELQG LGLDDLMKLE KLVEGGISRV LKIKGDKFMK EISSLKKKEA QLQEENSQLK QQSQARLNEE GQNVIEQGHS ADSITNNRSL
201: VNSHQDYNDS DTSLKLCLAF P
101: RDFVEKNREL RQLHGEELQG LGLDDLMKLE KLVEGGISRV LKIKGDKFMK EISSLKKKEA QLQEENSQLK QQSQARLNEE GQNVIEQGHS ADSITNNRSL
201: VNSHQDYNDS DTSLKLCLAF P
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.