Factsheet for PGSC0003DMT400024247

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000028
PGSC0003DMT400000383
PGSC0003DMT400004094
PGSC0003DMT400010451
PGSC0003DMT400024247
PGSC0003DMT400026576
PGSC0003DMT400063313
PGSC0003DMT400072888
PGSC0003DMT400073134

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24540.1	PGSC0003DMT400072888	AT1G26310.1	11439126
AT4G24540.1	PGSC0003DMT400072888	AT1G69120.1	11439126
AT4G24540.1	PGSC0003DMT400072888	AT1G69120.1	15805477
AT4G24540.1	PGSC0003DMT400004094	AT2G18040.1	20129060
AT4G24540.1	PGSC0003DMT400000383	AT2G45650.1	15805477
AT4G24540.1	PGSC0003DMT400000028	AT2G45660.1	15805477
AT4G24540.1	PGSC0003DMT400026576	AT2G45660.1	15805477
AT4G24540.1	PGSC0003DMT400073134	AT4G18960.1	15805477
AT4G24540.1	PGSC0003DMT400024247	AT4G24540.1	15805477
AT4G24540.1	PGSC0003DMT400010451	AT5G60910.1	15805477
AT4G24540.1	PGSC0003DMT400063313	AT5G60910.1	15805477
AT4G24540.1	PGSC0003DMT400010451	AT5G60910.1	21798944
AT4G24540.1	PGSC0003DMT400063313	AT5G60910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076280.2.1	Tomato	vacuole	74.47	89.74
KRH62216	Soybean	nucleus	18.72	66.67
PGSC0003DMT400041773	Potato	nucleus	54.89	54.2
AT4G24540.1	Thale cress	nucleus	49.36	52.73
CDY03445	Canola	nucleus	48.94	52.04
Os06t0217300-01	Rice	nucleus	49.36	52.02
Bra019221.1-P	Field mustard	nucleus	47.66	51.85
CDY11019	Canola	nucleus	47.66	51.85
Zm00001d018142_P001	Maize	nucleus	48.51	51.58
GSMUA_Achr3P06800_001	Banana	nucleus	50.21	51.53
Zm00001d052180_P001	Maize	nucleus	48.09	51.13
TraesCS6A01G313800.1	Wheat	nucleus	48.94	50.44
TraesCS6B01G343900.1	Wheat	cytosol	48.94	50.44
Os02t0761000-01	Rice	nucleus	48.94	50.44
KRH52935	Soybean	nucleus	50.21	50.43
KXG31156	Sorghum	nucleus	48.51	50.0
GSMUA_Achr10P...	Banana	nucleus	48.51	50.0
TraesCS6D01G293200.1	Wheat	nucleus	48.51	50.0
KXG40019	Sorghum	nucleus	48.94	49.57
TraesCS4D01G301100.1	Wheat	nucleus	47.66	49.56
Zm00001d044899_P001	Maize	nucleus	14.89	49.3
TraesCS4B01G302600.2	Wheat	nucleus	47.66	49.12
HORVU6Hr1G077300.8	Barley	nucleus	47.66	48.7
CDX92641	Canola	nucleus	47.23	48.47
HORVU4Hr1G077850.13	Barley	nucleus	47.23	47.44
EER88077	Sorghum	nucleus	45.11	47.11
TraesCS7D01G176700.1	Wheat	nucleus	45.11	46.9
Os03t0186600-01	Rice	nucleus	48.09	45.56
Zm00001d027957_P001	Maize	nucleus	48.51	45.06
PGSC0003DMT400083739	Potato	nucleus	41.7	44.34
TraesCS7A01G175200.2	Wheat	nucleus	44.26	43.33
VIT_18s0001g07460.t01	Wine grape	nucleus	58.72	43.12
TraesCS7B01G080300.2	Wheat	cytosol	43.83	42.74
GSMUA_Achr9P15180_001	Banana	nucleus	51.91	41.5
TraesCS4A01G002600.1	Wheat	nucleus	28.51	41.1
Zm00001d027955_P001	Maize	extracellular, golgi	25.53	33.33
HORVU7Hr1G036130.10	Barley	nucleus, plastid	31.49	30.83

Protein Annotations

EntrezGene:102577849	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AAB94005	ProteinID:AAB94005.1	ProteinID:AAV65504
ProteinID:AAV65504.1	ProteinID:AAV65507	ProteinID:AAV65507.1	EMBL:AF008651	EMBL:AY643733	EMBL:AY643736
ncoils:Coil	GO:GO:0000003	GO:GO:0000060	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006810	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009719	GO:GO:0009739	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0010077	GO:GO:0010220	GO:GO:0043565	GO:GO:0045893	GO:GO:0045944	GO:GO:0046982
GO:GO:0046983	GO:GO:0048438	GO:GO:0048510	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
UniProt:M1AJQ8	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	EnsemblPlantsGene:PGSC0003DMG400009363	PGSC:PGSC0003DMG400009363
EnsemblPlants:PGSC0003DMT400024247	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF179	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI000295B277	RefSeq:XP_006338063.1	SEG:seg	:	:	:

Description

MADS16 [Source:PGSC_GENE;Acc:PGSC0003DMG400009363]

Coordinates

chr4:+:64959661..64967188

Molecular Weight (calculated)

26530.2 Da

IEP (calculated)

6.825

GRAVY (calculated)

-0.503

Length

235 amino acids

Sequence
(BLAST)

001: MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSA TGKLFDFAST SMKDILGKYK LQSASLEKVD QPSLDLQLEN SLNMRLSKQV
101: ADKTRELRQM RGEELEGLSL EELQQIEKRL EAGFNRVLEI KGTRIMDEIT NLQRKGAELM EENKQLKYKM EIMKKGKLPL LTDMMMEEGQ SSESIITTNN
201: PDQDDSSNAS LKLGGTTAVE DDCSITSLKL GLPFS

Best Arabidopsis Sequence Match ( AT2G22540.3 )
(BLAST)

001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG

Arabidopsis Description

SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.