Factsheet for PGSC0003DMT400004094

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000028
PGSC0003DMT400024247
PGSC0003DMT400026576

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18040.1	PGSC0003DMT400000028	AT2G45660.1	20129060
AT2G18040.1	PGSC0003DMT400026576	AT2G45660.1	20129060
AT2G18040.1	PGSC0003DMT400024247	AT4G24540.1	20129060

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g110530.2.1	Tomato	plastid	97.46	97.46
VIT_04s0023g03190.t01	Wine grape	cytosol	79.66	79.66
GSMUA_Achr8P19300_001	Banana	cytosol	79.66	79.66
GSMUA_Achr11P...	Banana	nucleus	77.97	77.97
Bra024480.1-P	Field mustard	mitochondrion	76.27	75.63
CDY29218	Canola	mitochondrion	76.27	75.63
Bra039913.1-P	Field mustard	cytosol, mitochondrion, nucleus	75.42	74.79
CDY20906	Canola	mitochondrion	75.42	74.79
CDY38175	Canola	cytosol, mitochondrion, nucleus	75.42	74.79
AT2G18040.1	Thale cress	mitochondrion	75.42	74.79
KRH08096	Soybean	cytosol	79.66	74.6
CDY25130	Canola	cytosol, mitochondrion, nucleus	74.58	73.95
KRH69799	Soybean	cytosol	78.81	73.81
Os04t0663800-01	Rice	cytosol, nucleus	41.53	68.06
TraesCS2D01G009700.1	Wheat	cytosol	69.49	67.77
TraesCS2A01G007900.1	Wheat	cytosol, mitochondrion, nucleus	69.49	67.77
PGSC0003DMT400051327	Potato	nucleus	72.88	67.72
HORVU2Hr1G001350.2	Barley	nucleus	69.49	67.21
Zm00001d025062_P001	Maize	extracellular, mitochondrion, plastid	70.34	66.94
TraesCS2B01G012800.1	Wheat	cytosol, mitochondrion, nucleus	68.64	65.85
Os04t0118500-01	Rice	plastid	67.8	65.04
EES11766	Sorghum	nucleus	67.8	64.52
TraesCS2D01G491300.1	Wheat	mitochondrion	61.02	63.72
HORVU2Hr1G109660.3	Barley	cytosol	24.58	63.04
HORVU5Hr1G121760.1	Barley	cytosol	22.88	48.21
HORVU4Hr1G072290.1	Barley	cytosol	35.59	43.3
HORVU6Hr1G068220.3	Barley	cytosol	32.2	43.18
OQU82515	Sorghum	nucleus	66.95	38.16
TraesCS4A01G388100.2	Wheat	cytosol, mitochondrion, nucleus	32.2	35.51
TraesCS3B01G116600.1	Wheat	cytosol, mitochondrion, nucleus	29.66	35.35
HORVU3Hr1G096490.2	Barley	cytosol	35.59	30.0
CDX87855	Canola	nucleus	76.27	24.06
TraesCS5B01G513900.1	Wheat	nucleus	28.81	23.45
TraesCS6B01G233500.1	Wheat	mitochondrion, plastid	27.97	18.13
OQU79160	Sorghum	cytosol, nucleus, plastid	34.75	16.53

Protein Annotations

EntrezGene:102599211	MapMan:18.12.4	Gene3D:3.10.50.40	GO:GO:0000003	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005829	GO:GO:0005886	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009506	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630
GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853
GO:GO:0019538	GO:GO:0032880	InterPro:IPR000297	UniProt:M0ZMW0	PFAM:PF00639	EnsemblPlantsGene:PGSC0003DMG400001617
PGSC:PGSC0003DMG400001617	EnsemblPlants:PGSC0003DMT400004094	InterPro:PPIase_PpiC	PFscan:PS50198	PANTHER:PTHR10657	PANTHER:PTHR10657:SF4
SUPFAM:SSF54534	UniParc:UPI0002950B6C	RefSeq:XP_006359611.1	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase Pin1 [Source:PGSC_GENE;Acc:PGSC0003DMG400001617]

Coordinates

chr1:-:86908135..86911506

Molecular Weight (calculated)

12897.2 Da

IEP (calculated)

10.105

GRAVY (calculated)

-0.550

Length

118 amino acids

Sequence
(BLAST)

001: MASNQVRASH ILIKHEGSRR KSSWKDPEGR IISNTTRDAA VSQLKSFRDD IISGKSKFKD VASRFSDCSS AKRGGDLGPF GRGQMQKPFE VATYALEVGE
101: ISDIIDTDSG AHIILRTG

Best Arabidopsis Sequence Match ( AT2G18040.1 )
(BLAST)

001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA

Arabidopsis Description

PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.