CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74755
CDX92641
CDY03445
CDY11019
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18040.1	CDX74755	AT2G45660.1	20129060
AT2G18040.1	CDY27368	AT2G45660.1	20129060
AT2G18040.1	CDY37054	AT2G45660.1	20129060
AT2G18040.1	CDY53886	AT2G45660.1	20129060
AT2G18040.1	CDY60689	AT2G45660.1	20129060
AT2G18040.1	CDY69077	AT2G45660.1	20129060
AT2G18040.1	CDX92641	AT4G24540.1	20129060
AT2G18040.1	CDY03445	AT4G24540.1	20129060
AT2G18040.1	CDY11019	AT4G24540.1	20129060

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039913.1-P	Field mustard	cytosol, mitochondrion, nucleus	98.32	98.32
CDY38175	Canola	cytosol, mitochondrion, nucleus	98.32	98.32
CDY29218	Canola	mitochondrion	94.12	94.12
AT2G18040.1	Thale cress	mitochondrion	93.28	93.28
CDY20906	Canola	mitochondrion	92.44	92.44
VIT_04s0023g03190.t01	Wine grape	cytosol	75.63	76.27
Solyc01g110530.2.1	Tomato	plastid	75.63	76.27
GSMUA_Achr11P...	Banana	nucleus	75.63	76.27
GSMUA_Achr8P19300_001	Banana	cytosol	75.63	76.27
PGSC0003DMT400004094	Potato	nucleus	73.95	74.58
KRH08096	Soybean	cytosol	77.31	73.02
KRH69799	Soybean	cytosol	76.47	72.22
Os04t0663800-01	Rice	cytosol, nucleus	43.7	72.22
EES11766	Sorghum	nucleus	71.43	68.55
Zm00001d025062_P001	Maize	extracellular, mitochondrion, plastid	70.59	67.74
HORVU2Hr1G001350.2	Barley	nucleus	68.91	67.21
TraesCS2A01G007900.1	Wheat	cytosol, mitochondrion, nucleus	68.07	66.94
TraesCS2D01G009700.1	Wheat	cytosol	68.07	66.94
Os04t0118500-01	Rice	plastid	68.91	66.67
TraesCS2B01G012800.1	Wheat	cytosol, mitochondrion, nucleus	68.91	66.67
HORVU2Hr1G109660.3	Barley	cytosol	25.21	65.22
TraesCS2D01G491300.1	Wheat	mitochondrion	58.82	61.95
HORVU5Hr1G121760.1	Barley	cytosol	24.37	51.79
HORVU4Hr1G072290.1	Barley	cytosol	36.97	45.36
HORVU6Hr1G068220.3	Barley	cytosol	31.93	43.18
OQU82515	Sorghum	nucleus	66.39	38.16
TraesCS3B01G116600.1	Wheat	cytosol, mitochondrion, nucleus	29.41	35.35
TraesCS4A01G388100.2	Wheat	cytosol, mitochondrion, nucleus	28.57	31.78
HORVU3Hr1G096490.2	Barley	cytosol	36.97	31.43
CDX87855	Canola	nucleus	94.96	30.21
TraesCS5B01G513900.1	Wheat	nucleus	29.41	24.14
TraesCS6B01G233500.1	Wheat	mitochondrion, plastid	26.89	17.58
OQU79160	Sorghum	cytosol, nucleus, plastid	34.45	16.53

Protein Annotations

MapMan:18.12.4	Gene3D:3.10.50.40	GO:A0A078GF82	UniProt:A0A078GF82	EnsemblPlants:CDY25130	ProteinID:CDY25130
ProteinID:CDY25130.1	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00029013001
InterPro:IPR000297	PFAM:PF00639	InterPro:PPIase_PpiC	InterPro:PPIase_PpiC_CS	ScanProsite:PS01096	PFscan:PS50198
PANTHER:PTHR10657	PANTHER:PTHR10657:SF4	SUPFAM:SSF54534	UniParc:UPI0004EE5E70	:	:

Description

BnaC07g03770DPeptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078GF82]

Coordinates

chrLK032169:+:79270..81134

Molecular Weight (calculated)

13031.5 Da

IEP (calculated)

9.710

GRAVY (calculated)

-0.619

Length

119 amino acids

Sequence
(BLAST)

001: MSSRDQVKAS HILIKHQGSR RKASWKDPEG KVIMTTTREA AAEQLKSIRE DILSGKANFE DVATRVSDCS SAKRGGDLGP FGRGQMQKPF EEATYALKVG
101: DISEIVDTDS GVHIIKRTA

Best Arabidopsis Sequence Match ( AT2G18040.1 )
(BLAST)

001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA

Arabidopsis Description

PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.