Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11019 | Canola | nucleus | 86.9 | 92.13 |
| CDY03445 | Canola | nucleus | 82.53 | 85.52 |
| AT4G24540.1 | Thale cress | nucleus | 78.6 | 81.82 |
| KRH62216 | Soybean | nucleus | 20.96 | 72.73 |
| Zm00001d044899_P001 | Maize | nucleus | 19.65 | 63.38 |
| CDX89487 | Canola | nucleus | 53.71 | 52.12 |
| KRH52935 | Soybean | nucleus | 51.53 | 50.43 |
| CDY13746 | Canola | nucleus | 51.97 | 50.42 |
| CDX76906 | Canola | nucleus | 50.66 | 49.15 |
| Zm00001d052180_P001 | Maize | nucleus | 46.29 | 47.96 |
| Zm00001d018142_P001 | Maize | nucleus | 46.29 | 47.96 |
| PGSC0003DMT400024247 | Potato | nucleus | 48.47 | 47.23 |
| Os06t0217300-01 | Rice | nucleus | 45.85 | 47.09 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 46.72 | 46.72 |
| Os02t0761000-01 | Rice | nucleus | 46.29 | 46.49 |
| GSMUA_Achr10P... | Banana | nucleus | 45.85 | 46.05 |
| KXG31156 | Sorghum | nucleus | 45.41 | 45.61 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 44.54 | 45.13 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 44.1 | 44.3 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 44.1 | 44.3 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 44.1 | 44.3 |
| EER88077 | Sorghum | nucleus | 43.23 | 44.0 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 43.67 | 43.48 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 44.54 | 42.5 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 43.67 | 41.49 |
| CDY25607 | Canola | nucleus | 31.44 | 41.14 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 55.02 | 39.38 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 38.43 | 38.94 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 38.43 | 38.6 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 39.3 | 38.46 |
| KXG40019 | Sorghum | nucleus | 38.43 | 37.93 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 47.6 | 37.07 |
| Solyc04g076280.2.1 | Tomato | vacuole | 31.0 | 36.41 |
| Os03t0186600-01 | Rice | nucleus | 38.43 | 35.48 |
| Zm00001d027957_P001 | Maize | nucleus | 37.99 | 34.39 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 24.45 | 34.36 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 28.38 | 27.08 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 20.09 | 25.56 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078DTP6 | EnsemblPlants:CDX92641 | ProteinID:CDX92641 | ProteinID:CDX92641.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00154448001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF179 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE95BA | SEG:seg | : | : |
Description
BnaC07g38990D
Coordinates
chrLK031873:-:125477..128930
Molecular Weight (calculated)
25985.3 Da
IEP (calculated)
9.849
GRAVY (calculated)
-0.633
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRQDSRSVV KKMAREKRRI KKIDNITARQ VTFSKRRRGI FKKAGELSVL CDADVALIIF SATGKLFEFS SSRMRDILGR YNLHASNINK VMGLPSPYHQ
101: LEDCNLSRLS QEVEDKTKQL RKLRGEDLEG LNLEELQRLE KMLESGLSRV SEKKGEFLMS QISSLEKRGS ELADENRRLR ERVVTTMEMA KTMALKEAVE
201: TESATTNVSS YDSGAPLEDD FSDTSLKLG
101: LEDCNLSRLS QEVEDKTKQL RKLRGEDLEG LNLEELQRLE KMLESGLSRV SEKKGEFLMS QISSLEKRGS ELADENRRLR ERVVTTMEMA KTMALKEAVE
201: TESATTNVSS YDSGAPLEDD FSDTSLKLG
001: MAREKIRIKK IDNITARQVT FSKRRRGIFK KADELSVLCD ADVALIIFSA TGKLFEFSSS RMRDILGRYS LHASNINKLM DPPSTHLRLE NCNLSRLSKE
101: VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS
201: GTPLEDDSDT SLKLGLPSWE
101: VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS
201: GTPLEDDSDT SLKLGLPSWE
Arabidopsis Description
AGL24MADS-box protein AGL24 [Source:UniProtKB/Swiss-Prot;Acc:O82794]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.