Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019221.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY03445 | Canola | nucleus | 90.28 | 88.24 |
| CDX92641 | Canola | nucleus | 92.13 | 86.9 |
| AT4G24540.1 | Thale cress | nucleus | 85.65 | 84.09 |
| KRH62216 | Soybean | nucleus | 22.69 | 74.24 |
| Zm00001d044899_P001 | Maize | nucleus | 20.83 | 63.38 |
| CDX89487 | Canola | nucleus | 56.94 | 52.12 |
| CDY13746 | Canola | nucleus | 55.09 | 50.42 |
| KRH52935 | Soybean | nucleus | 54.17 | 50.0 |
| CDX76906 | Canola | nucleus | 53.7 | 49.15 |
| Zm00001d018142_P001 | Maize | nucleus | 49.54 | 48.42 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 50.93 | 48.03 |
| PGSC0003DMT400024247 | Potato | nucleus | 51.85 | 47.66 |
| Zm00001d052180_P001 | Maize | nucleus | 48.61 | 47.51 |
| GSMUA_Achr10P... | Banana | nucleus | 49.54 | 46.93 |
| Os06t0217300-01 | Rice | nucleus | 47.69 | 46.19 |
| KXG31156 | Sorghum | nucleus | 48.61 | 46.05 |
| Os02t0761000-01 | Rice | nucleus | 48.61 | 46.05 |
| EER88077 | Sorghum | nucleus | 46.3 | 44.44 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 46.76 | 44.3 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 46.76 | 44.3 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 46.76 | 44.3 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 46.3 | 44.25 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 45.83 | 43.04 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 46.76 | 42.08 |
| CDY25607 | Canola | nucleus | 33.33 | 41.14 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 45.37 | 40.66 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 58.8 | 39.69 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 41.2 | 39.38 |
| KXG40019 | Sorghum | nucleus | 41.2 | 38.36 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 41.2 | 38.03 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 51.39 | 37.76 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 39.81 | 37.72 |
| Solyc04g076280.2.1 | Tomato | vacuole | 33.33 | 36.92 |
| Os03t0186600-01 | Rice | nucleus | 40.28 | 35.08 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 26.39 | 34.97 |
| Zm00001d027957_P001 | Maize | nucleus | 40.74 | 34.78 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 22.69 | 27.22 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 29.17 | 26.25 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078FDP1 | UniProt:A0A078FDP1 | EnsemblPlants:CDY11019 | ProteinID:CDY11019 |
| ProteinID:CDY11019.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00048970001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF179 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002540FD8 | SEG:seg |
Description
BnaA03g46780DBnaA03g46780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDP1]
Coordinates
chrLK032008:-:656197..659535
Molecular Weight (calculated)
24546.4 Da
IEP (calculated)
9.097
GRAVY (calculated)
-0.630
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MAREKRRIKK IDNITARQVT FSKRRRGIFK KADELSVLCD ADVALIIFSA TGKLFEFSSS RMKDILGRYN LHASNINKVM GQPSPYNQVE NCNLSRLSQE
101: VEDKTKQLRK LRGEDLEGLN LEELQRLEKM LESGLSRVSE KKGEFLMSQI SSLEKRGSEL VDENRRLRER VVTMEMAKTM ALKEAVETES ATTNVSSYDS
201: GAPLEDDFSD TSLKLG
101: VEDKTKQLRK LRGEDLEGLN LEELQRLEKM LESGLSRVSE KKGEFLMSQI SSLEKRGSEL VDENRRLRER VVTMEMAKTM ALKEAVETES ATTNVSSYDS
201: GAPLEDDFSD TSLKLG
001: MAREKIRIKK IDNITARQVT FSKRRRGIFK KADELSVLCD ADVALIIFSA TGKLFEFSSS RMRDILGRYS LHASNINKLM DPPSTHLRLE NCNLSRLSKE
101: VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS
201: GTPLEDDSDT SLKLGLPSWE
101: VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS
201: GTPLEDDSDT SLKLGLPSWE
Arabidopsis Description
AGL24MADS-box protein AGL24 [Source:UniProtKB/Swiss-Prot;Acc:O82794]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.