Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012997.1-P | Field mustard | nucleus | 99.59 | 99.59 |
| CDY58690 | Canola | nucleus | 95.85 | 95.85 |
| CDY42841 | Canola | nucleus | 92.53 | 92.92 |
| AT5G60910.1 | Thale cress | nucleus | 92.53 | 92.15 |
| CDY16832 | Canola | nucleus | 91.7 | 91.7 |
| CDY47002 | Canola | nucleus | 91.7 | 91.7 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 17.43 | 62.69 |
| KRH03173 | Soybean | nucleus | 61.83 | 62.34 |
| Solyc06g069430.2.1 | Tomato | nucleus | 62.66 | 61.63 |
| Solyc03g114830.2.1 | Tomato | nucleus | 62.24 | 60.73 |
| KRH56774 | Soybean | nucleus | 61.41 | 60.66 |
| CDY19977 | Canola | nucleus | 25.31 | 59.8 |
| PGSC0003DMT400063313 | Potato | nucleus | 61.41 | 59.68 |
| VIT_17s0000g04990.t01 | Wine grape | nucleus | 59.34 | 58.85 |
| PGSC0003DMT400010451 | Potato | nucleus | 61.0 | 58.8 |
| CDY72391 | Canola | nucleus | 17.43 | 56.0 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 54.77 | 53.66 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 53.53 | 53.31 |
| CDY36077 | Canola | nucleus | 48.13 | 52.49 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 53.11 | 52.46 |
| CDY34564 | Canola | nucleus | 47.3 | 52.29 |
| EER90862 | Sorghum | nucleus | 53.11 | 52.24 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 53.53 | 52.02 |
| Os03t0752800-02 | Rice | nucleus | 52.7 | 51.63 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 53.53 | 51.6 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 52.28 | 51.43 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 53.53 | 51.39 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 53.53 | 50.79 |
| CDX95960 | Canola | nucleus | 52.7 | 49.61 |
| CDY33554 | Canola | nucleus | 52.7 | 49.61 |
| CDY65811 | Canola | nucleus | 52.7 | 49.61 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 46.89 | 49.13 |
| GSMUA_Achr10P... | Banana | nucleus | 57.68 | 48.77 |
| CDX79856 | Canola | nucleus | 17.84 | 48.31 |
| Os07t0108900-02 | Rice | nucleus | 53.11 | 47.94 |
| EER97510 | Sorghum | nucleus | 50.21 | 47.83 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 53.53 | 47.6 |
| EER95753 | Sorghum | nucleus | 53.11 | 47.41 |
| Zm00001d022088_P004 | Maize | nucleus | 50.62 | 47.29 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 51.45 | 47.15 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 53.53 | 47.08 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 53.53 | 47.08 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 51.45 | 46.62 |
| Zm00001d018667_P003 | Maize | nucleus | 52.28 | 46.49 |
| Os07t0605200-01 | Rice | nucleus | 47.3 | 45.78 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 50.62 | 45.69 |
| CDY04265 | Canola | nucleus | 52.28 | 45.49 |
| Zm00001d013259_P002 | Maize | nucleus | 52.28 | 45.16 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 49.79 | 44.94 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 49.79 | 44.94 |
| CDY00082 | Canola | nucleus | 45.64 | 44.35 |
| CDY07357 | Canola | nucleus | 52.7 | 43.94 |
| CDX86353 | Canola | nucleus | 44.81 | 43.37 |
| CDY45899 | Canola | nucleus | 44.4 | 42.97 |
| Zm00001d034045_P003 | Maize | nucleus | 51.45 | 42.61 |
| Zm00001d007949_P001 | Maize | nucleus | 53.11 | 41.97 |
| HORVU2Hr1G063800.7 | Barley | nucleus, plastid | 53.11 | 41.83 |
| HORVU5Hr1G095630.3 | Barley | nucleus, plastid | 52.28 | 41.04 |
| CDY18911 | Canola | nucleus | 39.83 | 40.51 |
| CDY48451 | Canola | nucleus | 25.31 | 39.87 |
| Os12t0501700-00 | Rice | nucleus | 38.17 | 39.48 |
| CDX71922 | Canola | nucleus | 21.99 | 39.26 |
| CDX74754 | Canola | nucleus | 40.66 | 38.28 |
| CDY18912 | Canola | nucleus | 38.17 | 38.17 |
| CDY53885 | Canola | nucleus | 40.66 | 38.13 |
| CDY34718 | Canola | nucleus | 39.83 | 38.1 |
| CDY26462 | Canola | nucleus | 39.83 | 37.8 |
| CDY43239 | Canola | nucleus | 39.0 | 37.6 |
| CDY11824 | Canola | nucleus | 38.17 | 37.55 |
| CDY66153 | Canola | nucleus | 38.17 | 37.55 |
| CDX78653 | Canola | nucleus | 40.25 | 37.45 |
| CDY57524 | Canola | nucleus | 38.59 | 37.2 |
| CDX69499 | Canola | nucleus | 40.66 | 37.12 |
| CDX70651 | Canola | nucleus | 39.83 | 37.07 |
| CDY15724 | Canola | nucleus | 38.59 | 36.9 |
| KXG23502 | Sorghum | nucleus | 34.02 | 36.77 |
| CDX84935 | Canola | nucleus | 38.17 | 36.65 |
| CDY27603 | Canola | nucleus | 38.17 | 36.36 |
| CDY03905 | Canola | nucleus | 38.59 | 34.44 |
| CDX89097 | Canola | nucleus | 34.85 | 34.15 |
| CDX79857 | Canola | nucleus | 34.44 | 34.02 |
| CDY51202 | Canola | nucleus | 36.1 | 33.85 |
| CDY02978 | Canola | nucleus | 35.68 | 33.59 |
| Zm00001d023736_P001 | Maize | nucleus | 35.68 | 33.46 |
| CDX90741 | Canola | nucleus | 31.95 | 33.33 |
| CDY04164 | Canola | nucleus | 35.68 | 33.33 |
| CDY09267 | Canola | nucleus | 34.44 | 33.33 |
| CDX98597 | Canola | nucleus | 34.02 | 32.67 |
| CDX78909 | Canola | nucleus | 34.02 | 32.54 |
| CDX75412 | Canola | nucleus | 31.95 | 32.08 |
| CDX90394 | Canola | nucleus | 30.29 | 31.88 |
| CDX69036 | Canola | nucleus | 31.54 | 31.67 |
| CDX72465 | Canola | nucleus | 31.54 | 31.67 |
| CDY49287 | Canola | nucleus | 31.54 | 31.67 |
| CDX98330 | Canola | nucleus | 32.37 | 31.45 |
| CDX69345 | Canola | nucleus | 29.46 | 31.28 |
| CDX85287 | Canola | nucleus | 24.07 | 31.02 |
| CDX75686 | Canola | nucleus | 29.46 | 31.0 |
| CDY25613 | Canola | nucleus | 29.05 | 30.7 |
| CDX89496 | Canola | nucleus | 28.63 | 30.13 |
| CDY35780 | Canola | nucleus | 23.65 | 28.93 |
| CDY49254 | Canola | nucleus | 32.37 | 28.36 |
| CDX89005 | Canola | nucleus | 31.54 | 27.54 |
| CDY33113 | Canola | nucleus | 35.27 | 27.51 |
| CDY00589 | Canola | nucleus | 31.12 | 27.27 |
| CDY65347 | Canola | nucleus | 17.43 | 26.58 |
| CDX99406 | Canola | nucleus | 34.02 | 26.28 |
| CDY01574 | Canola | nucleus | 12.86 | 25.2 |
| CDY60297 | Canola | nucleus | 30.29 | 25.0 |
| CDY42485 | Canola | nucleus | 36.51 | 23.28 |
| CDY13236 | Canola | mitochondrion | 19.09 | 22.89 |
| CDX67765 | Canola | nucleus | 32.37 | 22.41 |
| CDY45709 | Canola | nucleus | 15.77 | 21.97 |
| CDY49686 | Canola | nucleus | 15.77 | 21.97 |
| CDX71166 | Canola | nucleus | 30.29 | 20.98 |
| CDY71878 | Canola | endoplasmic reticulum | 21.99 | 20.15 |
| CDY65346 | Canola | cytosol | 1.24 | 12.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078EJE8 | EnsemblPlants:CDY02185 | ProteinID:CDY02185 | ProteinID:CDY02185.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00113594001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF155 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EEAFDC | SEG:seg | : | : |
Description
BnaA03g39820D
Coordinates
chrLK031932:+:572929..575838
Molecular Weight (calculated)
27439.9 Da
IEP (calculated)
9.871
GRAVY (calculated)
-0.620
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALVIFSS KGKLFEYSTD SCMERILERY DRYLYSDKQL VGRDISQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLHAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNALLK KIKEREKNTV QQEGQLIQCS NNSSILQPQY
201: CLTSSRDGFV GRVGGDDGGA SSLAEPNSLL PAWMLRLATN E
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLHAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNALLK KIKEREKNTV QQEGQLIQCS NNSSILQPQY
201: CLTSSRDGFV GRVGGDDGGA SSLAEPNSLL PAWMLRLATN E
001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD SCMERILERY DRYLYSDKQL VGRDVSQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE
Arabidopsis Description
AGL8Agamous-like MADS-box protein AGL8 [Source:UniProtKB/Swiss-Prot;Acc:Q38876]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.