Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030032.1-P | Field mustard | nucleus | 92.59 | 99.21 |
| CDY15724 | Canola | nucleus | 91.48 | 98.02 |
| AT1G24260.2 | Thale cress | nucleus | 85.56 | 92.03 |
| CDY27603 | Canola | nucleus | 85.19 | 90.91 |
| CDX84935 | Canola | nucleus | 83.7 | 90.04 |
| CDY66153 | Canola | nucleus | 79.63 | 87.76 |
| KRG97386 | Soybean | nucleus | 46.67 | 87.5 |
| CDY11824 | Canola | nucleus | 79.26 | 87.35 |
| VIT_01s0010g03900.t01 | Wine grape | nucleus | 65.19 | 79.64 |
| KRH58800 | Soybean | nucleus | 70.0 | 77.46 |
| KRH42695 | Soybean | nucleus | 69.26 | 76.64 |
| Solyc05g015750.2.1 | Tomato | nucleus | 67.04 | 75.1 |
| PGSC0003DMT400056363 | Potato | nucleus | 67.04 | 75.1 |
| KRH31527 | Soybean | nucleus | 66.67 | 74.07 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 18.15 | 73.13 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 62.96 | 69.96 |
| CDY26462 | Canola | nucleus | 58.15 | 61.81 |
| CDY72391 | Canola | nucleus | 17.04 | 61.33 |
| CDY57524 | Canola | nucleus | 55.93 | 60.4 |
| CDY34718 | Canola | nucleus | 56.3 | 60.32 |
| CDX69499 | Canola | nucleus | 58.52 | 59.85 |
| CDX78653 | Canola | nucleus | 57.41 | 59.85 |
| CDX70651 | Canola | nucleus | 57.04 | 59.46 |
| CDY43239 | Canola | nucleus | 54.81 | 59.2 |
| CDY19977 | Canola | nucleus | 20.74 | 54.9 |
| CDX79856 | Canola | nucleus | 17.78 | 53.93 |
| CDY51202 | Canola | nucleus | 46.67 | 49.03 |
| CDY02978 | Canola | nucleus | 46.3 | 48.83 |
| CDY04164 | Canola | nucleus | 46.3 | 48.45 |
| CDX71922 | Canola | nucleus | 24.07 | 48.15 |
| CDY34564 | Canola | nucleus | 35.93 | 44.5 |
| CDY36077 | Canola | nucleus | 36.3 | 44.34 |
| CDY18911 | Canola | nucleus | 38.52 | 43.88 |
| CDY48451 | Canola | nucleus | 24.44 | 43.14 |
| CDY53885 | Canola | nucleus | 40.37 | 42.41 |
| CDY18912 | Canola | nucleus | 37.78 | 42.32 |
| CDX74754 | Canola | nucleus | 40.0 | 42.19 |
| CDX89097 | Canola | nucleus | 37.04 | 40.65 |
| CDY33113 | Canola | nucleus | 46.3 | 40.45 |
| CDY42841 | Canola | nucleus | 35.19 | 39.58 |
| CDY33554 | Canola | nucleus | 37.04 | 39.06 |
| CDY58690 | Canola | nucleus | 34.81 | 39.0 |
| CDY16832 | Canola | nucleus | 34.81 | 39.0 |
| CDY65811 | Canola | nucleus | 36.67 | 38.67 |
| CDX95960 | Canola | nucleus | 36.67 | 38.67 |
| CDY02185 | Canola | nucleus | 34.44 | 38.59 |
| CDY47002 | Canola | nucleus | 34.44 | 38.59 |
| CDX86353 | Canola | nucleus | 35.19 | 38.15 |
| CDY45899 | Canola | nucleus | 35.19 | 38.15 |
| CDY00082 | Canola | nucleus | 34.81 | 37.9 |
| CDX79857 | Canola | nucleus | 33.33 | 36.89 |
| CDX90741 | Canola | nucleus | 31.11 | 36.36 |
| CDY09267 | Canola | nucleus | 33.33 | 36.14 |
| CDY04265 | Canola | nucleus | 37.04 | 36.1 |
| CDX78909 | Canola | nucleus | 32.96 | 35.32 |
| CDX98597 | Canola | nucleus | 32.59 | 35.06 |
| CDY07357 | Canola | nucleus | 37.04 | 34.6 |
| CDX98330 | Canola | nucleus | 31.48 | 34.27 |
| CDX90394 | Canola | nucleus | 28.52 | 33.62 |
| CDX69345 | Canola | nucleus | 28.15 | 33.48 |
| CDY25613 | Canola | nucleus | 28.15 | 33.33 |
| CDX75686 | Canola | nucleus | 28.15 | 33.19 |
| CDY49686 | Canola | nucleus | 21.11 | 32.95 |
| CDY45709 | Canola | nucleus | 21.11 | 32.95 |
| CDX69036 | Canola | nucleus | 29.26 | 32.92 |
| CDX75412 | Canola | nucleus | 29.26 | 32.92 |
| CDX89496 | Canola | nucleus | 27.78 | 32.75 |
| CDY49254 | Canola | nucleus | 32.59 | 32.0 |
| CDX72465 | Canola | nucleus | 28.15 | 31.67 |
| CDY49287 | Canola | nucleus | 28.15 | 31.67 |
| CDY00589 | Canola | nucleus | 30.74 | 30.18 |
| CDX89005 | Canola | nucleus | 30.74 | 30.07 |
| CDX99406 | Canola | nucleus | 32.96 | 28.53 |
| CDY60297 | Canola | nucleus | 29.63 | 27.4 |
| CDY42485 | Canola | nucleus | 38.15 | 27.25 |
| CDY65347 | Canola | nucleus | 15.93 | 27.22 |
| CDX85287 | Canola | nucleus | 18.52 | 26.74 |
| CDY35780 | Canola | nucleus | 18.52 | 25.38 |
| CDX67765 | Canola | nucleus | 32.22 | 25.0 |
| CDY13236 | Canola | mitochondrion | 18.15 | 24.38 |
| CDY01574 | Canola | nucleus | 10.74 | 23.58 |
| CDX71166 | Canola | nucleus | 28.89 | 22.41 |
| CDY71878 | Canola | endoplasmic reticulum | 20.37 | 20.91 |
| CDY65346 | Canola | cytosol | 0.74 | 8.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078EPK5 | EnsemblPlants:CDY03905 | ProteinID:CDY03905 | ProteinID:CDY03905.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00117397001 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF351 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDBBC8 | SEG:seg | : |
Description
BnaC07g11300D
Coordinates
chrLK031947:+:747024..749225
Molecular Weight (calculated)
31585.1 Da
IEP (calculated)
9.776
GRAVY (calculated)
-0.868
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNCKVKEKK KREGKKRRMG RGRVELKRIE NKINRQVTFA KRRNGLLKKA YELSVLCDAE VALIIFSNRG KLYEFCSSSS MIRTLERYQK CNYGPPEPNV
101: PSREALAVEL SSQQEYLKLK ERYEALQRTQ RNLLGEDLGP LSTKELELLE RQLDSSLKQI RALRTQFMLD QLNDLQSKER MLNETNKTLR LRLADGYQMP
201: LQLNPSQEDR HVDYGRHDQQ QHSHHAFFQP LECEPILQMG YQGHQNHGME AGPSAINYML GWLPYDTSSI
101: PSREALAVEL SSQQEYLKLK ERYEALQRTQ RNLLGEDLGP LSTKELELLE RQLDSSLKQI RALRTQFMLD QLNDLQSKER MLNETNKTLR LRLADGYQMP
201: LQLNPSQEDR HVDYGRHDQQ QHSHHAFFQP LECEPILQMG YQGHQNHGME AGPSAINYML GWLPYDTSSI
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAV ELSSQQEYLK
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.