Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014552.1-P | Field mustard | nucleus | 89.49 | 99.6 |
| CDX98330 | Canola | nucleus | 84.06 | 93.55 |
| CDY00589 | Canola | nucleus | 89.49 | 89.82 |
| CDX71922 | Canola | nucleus | 43.12 | 88.15 |
| CDY72391 | Canola | nucleus | 23.55 | 86.67 |
| CDY49254 | Canola | nucleus | 82.97 | 83.27 |
| CDX79857 | Canola | nucleus | 73.19 | 82.79 |
| AT3G58780.4 | Thale cress | nucleus | 82.61 | 81.14 |
| CDX79856 | Canola | nucleus | 25.72 | 79.78 |
| KRH14461 | Soybean | nucleus | 28.62 | 75.96 |
| CDX67765 | Canola | nucleus | 84.42 | 66.95 |
| KRG98899 | Soybean | nucleus | 58.7 | 65.85 |
| KRH46066 | Soybean | nucleus | 58.7 | 65.59 |
| KRH73684 | Soybean | nucleus | 57.25 | 64.23 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 38.77 | 61.14 |
| GSMUA_Achr10P... | Banana | nucleus | 49.64 | 59.83 |
| Solyc07g055920.2.1 | Tomato | nucleus | 56.88 | 58.8 |
| CDY09267 | Canola | nucleus | 52.9 | 58.63 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 57.61 | 58.03 |
| CDX78909 | Canola | nucleus | 52.9 | 57.94 |
| CDX98597 | Canola | nucleus | 52.54 | 57.77 |
| PGSC0003DMT400044552 | Potato | nucleus | 52.54 | 57.09 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 13.77 | 56.72 |
| CDX90741 | Canola | nucleus | 45.65 | 54.55 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 49.64 | 53.94 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 47.1 | 51.59 |
| Zm00001d039434_P001 | Maize | nucleus | 48.91 | 51.53 |
| EES00105 | Sorghum | nucleus | 49.28 | 50.56 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 45.65 | 50.4 |
| HORVU1Hr1G023620.1 | Barley | nucleus | 46.01 | 50.4 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 46.01 | 50.4 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 46.38 | 50.39 |
| HORVU3Hr1G026650.1 | Barley | nucleus | 48.91 | 49.82 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 45.65 | 49.41 |
| Os01t0201700-02 | Rice | nucleus | 49.28 | 49.28 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 48.55 | 49.08 |
| Zm00001d023955_P003 | Maize | nucleus | 47.1 | 49.06 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 48.55 | 48.91 |
| Os05t0203800-02 | Rice | nucleus | 48.19 | 48.9 |
| Os12t0207000-01 | Rice | nucleus | 47.46 | 48.52 |
| CDY13236 | Canola | mitochondrion | 35.14 | 48.26 |
| Zm00001d042591_P002 | Maize | nucleus | 46.74 | 48.13 |
| EES15827 | Sorghum | nucleus | 46.74 | 47.96 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 46.74 | 47.96 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 46.38 | 47.58 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 46.38 | 47.58 |
| Os01t0886200-01 | Rice | nucleus | 45.29 | 47.17 |
| EES01878 | Sorghum | nucleus | 46.74 | 46.57 |
| CDX99406 | Canola | nucleus | 52.54 | 46.47 |
| Zm00001d041781_P001 | Maize | nucleus | 47.46 | 45.64 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 45.29 | 45.45 |
| CDY01574 | Canola | nucleus | 19.93 | 44.72 |
| CDY65347 | Canola | nucleus | 25.36 | 44.3 |
| CDY48451 | Canola | nucleus | 24.28 | 43.79 |
| GSMUA_Achr10P... | Banana | nucleus | 50.36 | 43.57 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 48.55 | 43.23 |
| CDY19977 | Canola | nucleus | 15.94 | 43.14 |
| CDY60297 | Canola | nucleus | 44.93 | 42.47 |
| OQU77603 | Sorghum | nucleus | 43.48 | 41.1 |
| Zm00001d037737_P001 | Maize | nucleus | 45.29 | 40.85 |
| HORVU1Hr1G029220.1 | Barley | nucleus | 47.1 | 39.88 |
| Zm00001d008882_P001 | Maize | nucleus | 44.2 | 37.08 |
| CDY43239 | Canola | nucleus | 31.52 | 34.8 |
| CDY57524 | Canola | nucleus | 31.16 | 34.4 |
| CDY26462 | Canola | nucleus | 31.52 | 34.25 |
| CDY34718 | Canola | nucleus | 31.16 | 34.13 |
| CDY34564 | Canola | nucleus | 26.81 | 33.95 |
| CDY36077 | Canola | nucleus | 27.17 | 33.94 |
| CDY18911 | Canola | nucleus | 28.99 | 33.76 |
| CDY11824 | Canola | nucleus | 29.71 | 33.47 |
| CDY66153 | Canola | nucleus | 29.71 | 33.47 |
| CDX69499 | Canola | nucleus | 31.88 | 33.33 |
| CDX70651 | Canola | nucleus | 31.16 | 33.2 |
| CDX78653 | Canola | nucleus | 31.16 | 33.2 |
| CDY15724 | Canola | nucleus | 30.07 | 32.94 |
| CDX72465 | Canola | nucleus | 28.62 | 32.92 |
| CDY49287 | Canola | nucleus | 28.62 | 32.92 |
| CDY53885 | Canola | nucleus | 30.43 | 32.68 |
| CDX69345 | Canola | nucleus | 26.81 | 32.6 |
| CDX74754 | Canola | nucleus | 30.07 | 32.42 |
| CDY71878 | Canola | endoplasmic reticulum | 30.8 | 32.32 |
| CDX84935 | Canola | nucleus | 29.35 | 32.27 |
| CDX69036 | Canola | nucleus | 27.9 | 32.08 |
| CDX75412 | Canola | nucleus | 27.9 | 32.08 |
| CDY42841 | Canola | nucleus | 27.9 | 32.08 |
| CDY27603 | Canola | nucleus | 29.35 | 32.02 |
| CDY16832 | Canola | nucleus | 27.9 | 31.95 |
| CDY18912 | Canola | nucleus | 27.9 | 31.95 |
| CDX90394 | Canola | nucleus | 26.45 | 31.88 |
| CDY25613 | Canola | nucleus | 26.09 | 31.58 |
| CDY02185 | Canola | nucleus | 27.54 | 31.54 |
| CDY47002 | Canola | nucleus | 27.54 | 31.54 |
| CDX75686 | Canola | nucleus | 26.09 | 31.44 |
| CDX89496 | Canola | nucleus | 26.09 | 31.44 |
| CDY58690 | Canola | nucleus | 27.17 | 31.12 |
| CDY03905 | Canola | nucleus | 30.07 | 30.74 |
| CDY04164 | Canola | nucleus | 28.62 | 30.62 |
| CDY45899 | Canola | nucleus | 27.17 | 30.12 |
| CDY02978 | Canola | nucleus | 27.54 | 29.69 |
| CDY51202 | Canola | nucleus | 27.54 | 29.57 |
| CDY00082 | Canola | nucleus | 26.45 | 29.44 |
| CDX86353 | Canola | nucleus | 26.45 | 29.32 |
| CDX89097 | Canola | nucleus | 25.72 | 28.86 |
| CDY33554 | Canola | nucleus | 26.45 | 28.52 |
| CDY65811 | Canola | nucleus | 26.45 | 28.52 |
| CDX95960 | Canola | nucleus | 26.09 | 28.12 |
| CDY04265 | Canola | nucleus | 26.81 | 26.71 |
| CDY07357 | Canola | nucleus | 26.81 | 25.61 |
| CDY33113 | Canola | nucleus | 28.62 | 25.57 |
| CDX71166 | Canola | nucleus | 26.45 | 20.98 |
| CDX85287 | Canola | nucleus | 13.77 | 20.32 |
| CDY35780 | Canola | nucleus | 14.13 | 19.8 |
| CDY42485 | Canola | nucleus | 26.45 | 19.31 |
| CDY45709 | Canola | nucleus | 9.78 | 15.61 |
| CDY49686 | Canola | nucleus | 9.78 | 15.61 |
| CDY65346 | Canola | cytosol | 1.09 | 12.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078DIG3 | EnsemblPlants:CDX89005 | ProteinID:CDX89005 | ProteinID:CDX89005.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00149118001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF150 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE7F65 | : | : | : |
Description
BnaA04g01810D
Coordinates
chrLK031857:+:474566..479259
Molecular Weight (calculated)
31836.0 Da
IEP (calculated)
9.405
GRAVY (calculated)
-0.688
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGGSSHDA ESNKKLVRGK IEIKRIENTT SRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VVFSTRGRLY EYANNRKYLS CLLNSLAVFS FTRFMKHWNL
101: MHVCVKGTIE RYKKACSDAV NPPTVTEANT QYYQQEASKL RRQIRDIQNS NRHIVGESLG SLNFKELKNL EGRLEKGINR VRSKKNELLV AELEYMQKRE
201: IELQHDNMYL RAKITHCARL DPEQQESSVI QGTAVYESGL SSHDQSQNYN RSYIPVNLLE PNQQFSGQDQ PPLQLV
101: MHVCVKGTIE RYKKACSDAV NPPTVTEANT QYYQQEASKL RRQIRDIQNS NRHIVGESLG SLNFKELKNL EGRLEKGINR VRSKKNELLV AELEYMQKRE
201: IELQHDNMYL RAKITHCARL DPEQQESSVI QGTAVYESGL SSHDQSQNYN RSYIPVNLLE PNQQFSGQDQ PPLQLV
001: MEEGGSSHDA ESSKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSFIYL LLEKKKKKKK KKNLWIYSSH
101: VVRGTIERYK KACSDAVNPP SVTEANTQYY QQEASKLRRQ IRDIQNSNRH IVGESLGSLN FKELKNLEGR LEKGISRVRS KKNELLVAEI EYMQKREMEL
201: QHNNMYLRAK IAEGARLNPD QQESSVIQGT TVYESGVSSH DQSQHYNRNY IPVNLLEPNQ QFSGQDQPPL QLV
101: VVRGTIERYK KACSDAVNPP SVTEANTQYY QQEASKLRRQ IRDIQNSNRH IVGESLGSLN FKELKNLEGR LEKGISRVRS KKNELLVAEI EYMQKREMEL
201: QHNNMYLRAK IAEGARLNPD QQESSVIQGT TVYESGVSSH DQSQHYNRNY IPVNLLEPNQ QFSGQDQPPL QLV
Arabidopsis Description
SHP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.