Factsheet for Os12t0207000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0201700-02
Os01t0886200-01
Os02t0579600-00
Os02t0682200-01
Os02t0731200-01
Os02t0761000-01
Os03t0186600-01
Os03t0752800-02
Os04t0304400-01
Os04t0580700-01
Os05t0203800-02
Os06t0217300-01
Os06t0347700-00
Os07t0108900-02
Os07t0605200-01
Os08t0431900-00
Os08t0531700-01
Os09t0507200-01
Os12t0207000-01
Os12t0501700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	Os02t0682200-01	AT2G45650.1	9418042
AT4G18960.1	Os04t0580700-01	AT2G45650.1	9418042
AT4G18960.1	Os08t0531700-01	AT3G02310.1	15604664
AT4G18960.1	Os09t0507200-01	AT3G02310.1	15604664
AT4G18960.1	Os08t0531700-01	AT3G02310.1	15805477
AT4G18960.1	Os09t0507200-01	AT3G02310.1	15805477
AT4G18960.1	Os08t0531700-01	AT3G02310.1	9418042
AT4G18960.1	Os09t0507200-01	AT3G02310.1	9418042
AT4G18960.1	Os02t0579600-00	AT3G57230.1	15805477
AT4G18960.1	Os02t0731200-01	AT3G57230.1	15805477
AT4G18960.1	Os04t0304400-01	AT3G57230.1	15805477
AT4G18960.1	Os06t0347700-00	AT3G57230.1	15805477
AT4G18960.1	Os08t0431900-00	AT3G57230.1	15805477
AT4G18960.1	Os02t0682200-01	AT3G61120.1	15805477
AT4G18960.1	Os04t0580700-01	AT3G61120.1	15805477
AT4G18960.1	Os01t0201700-02	AT4G18960.1	14555696
AT4G18960.1	Os01t0886200-01	AT4G18960.1	14555696
AT4G18960.1	Os05t0203800-02	AT4G18960.1	14555696
AT4G18960.1	Os12t0207000-01	AT4G18960.1	14555696
AT4G18960.1	Os02t0761000-01	AT4G24540.1	15805477
AT4G18960.1	Os03t0186600-01	AT4G24540.1	15805477
AT4G18960.1	Os06t0217300-01	AT4G24540.1	15805477
AT4G18960.1	Os03t0752800-02	AT5G60910.1	15805477
AT4G18960.1	Os07t0108900-02	AT5G60910.1	15805477
AT4G18960.1	Os07t0605200-01	AT5G60910.1	15805477
AT4G18960.1	Os12t0501700-00	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G115100.1	Wheat	nucleus	78.15	83.73
TraesCS5D01G118200.1	Wheat	nucleus	77.41	82.94
TraesCS5A01G117500.1	Wheat	nucleus	77.41	82.28
HORVU1Hr1G023620.1	Barley	nucleus	76.67	82.14
Zm00001d023955_P003	Maize	nucleus	74.07	75.47
EES15827	Sorghum	nucleus	74.07	74.35
Zm00001d041781_P001	Maize	nucleus	75.19	70.73
KRH14461	Soybean	nucleus	25.19	65.38
GSMUA_Achr10P...	Banana	nucleus	52.22	61.57
VIT_10s0003g02070.t01	Wine grape	nucleus	51.48	61.5
KRH21150	Soybean	nucleus	50.37	55.97
GSMUA_Achr6P14760_001	Banana	nucleus	52.22	55.51
KRH73684	Soybean	nucleus	50.0	54.88
KRG98899	Soybean	nucleus	50.0	54.88
KRH46066	Soybean	nucleus	50.0	54.66
AT4G18960.1	Thale cress	nucleus	50.74	54.37
KRH59043	Soybean	nucleus	48.89	54.32
Os01t0886200-01	Rice	nucleus	52.96	53.96
KRH42930	Soybean	nucleus	48.52	53.91
Bra004716.1-P	Field mustard	nucleus	48.52	53.69
CDX79857	Canola	nucleus	48.52	53.69
Os01t0201700-02	Rice	nucleus	54.44	53.26
CDY09267	Canola	nucleus	48.89	53.01
PGSC0003DMT400073134	Potato	nucleus	48.52	52.82
Bra014552.1-P	Field mustard	nucleus	48.52	52.82
Solyc02g071730.2.1	Tomato	nucleus	48.52	52.82
CDX78909	Canola	nucleus	49.26	52.78
Bra013364.1-P	Field mustard	nucleus	49.26	52.78
AT2G42830.2	Thale cress	nucleus	48.15	52.42
CDX98330	Canola	nucleus	47.78	52.02
Bra007419.1-P	Field mustard	nucleus	47.04	51.84
Bra012564.1-P	Field mustard	nucleus	48.15	51.79
CDX98597	Canola	nucleus	48.15	51.79
VIT_12s0142g00360.t01	Wine grape	nucleus	51.48	50.73
Solyc07g055920.2.1	Tomato	nucleus	49.26	49.81
Os05t0203800-02	Rice	nucleus	50.0	49.63
PGSC0003DMT400044552	Potato	nucleus	46.3	49.21
CDX89005	Canola	nucleus	48.52	47.46
CDY00589	Canola	nucleus	47.78	46.91
AT3G58780.4	Thale cress	nucleus	48.52	46.62
CDY49254	Canola	nucleus	47.41	46.55
Os08t0431900-00	Rice	nucleus	27.04	45.91
GSMUA_Achr10P...	Banana	nucleus	52.96	44.83
Bra003356.1-P	Field mustard	nucleus	44.81	44.32
CDX99406	Canola	nucleus	49.26	42.63
Os06t0347700-00	Rice	nucleus	22.96	42.18
Os06t0162800-01	Rice	nucleus	32.59	39.11
CDX67765	Canola	nucleus	48.52	37.64
Os02t0731200-01	Rice	nucleus	32.59	36.51
Os02t0682200-01	Rice	nucleus	33.33	36.0
Os02t0579600-00	Rice	nucleus	31.11	35.0
Os04t0304400-01	Rice	nucleus	28.89	34.36
Os09t0507200-01	Rice	nucleus	30.74	33.47
Os04t0580700-01	Rice	nucleus	31.48	33.46
Os03t0752800-02	Rice	nucleus	30.37	33.33
Os03t0215400-01	Rice	nucleus	31.48	33.07
Os03t0753100-01	Rice	nucleus	29.26	33.05
Os07t0605200-01	Rice	nucleus	29.26	31.73
Os07t0108900-02	Rice	nucleus	31.11	31.46
Os08t0531700-01	Rice	nucleus	28.89	31.33
Os12t0501700-00	Rice	nucleus	24.81	28.76

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:4351753	ProteinID:ABA96136.2	ProteinID:ABG21911.1	ProteinID:ABG21912.1
EMBL:AF151693	EMBL:AK070425	EMBL:AY332475	EMBL:AY551912	ProteinID:BAF29404.1	ProteinID:BAT16298.1
ncoils:Coil	ProteinID:EEE52930.1	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010622	GO:GO:0045944	GO:GO:0046983	GO:GO:0048283	GO:GO:0048481
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os12g0207000	EnsemblPlants:Os12t0207000-01
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF357	UniProt:Q2QW53	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00001B5004	RefSeq:XP_015618486.1	RefSeq:XP_015618487.1	SEG:seg

Description

MADS BOX GENE 13Transcription factor. (Os12t0207000-01)

Coordinates

chr12:+:5584743..5590285

Molecular Weight (calculated)

30270.3 Da

IEP (calculated)

9.508

GRAVY (calculated)

-0.467

Length

270 amino acids

Sequence
(BLAST)

001: MGRGRIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN NNVKATIDRY KKAHACGSTS GAPLIEVNAQ QYYQQESAKL
101: RHQIQMLQNT NKHLVGDNVS NLSLKELKQL ESRLEKGISK IRARKNELLA SEINYMAKRE IELQNDNMDL RTKIAEEEQQ LQQVTVARSA AMELQAAAAA
201: QQQQQNPFAV AAAQLDMKCF FPLNLFEAAA QVQAVAAQRQ QIIPTELNLG YHHHLAIPGA AAADAPPPHF

Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)

001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV

Arabidopsis Description

AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.